Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 472,337 – 472,439 |
Length | 102 |
Max. P | 0.814204 |
Location | 472,337 – 472,439 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 85.29 |
Mean single sequence MFE | -31.24 |
Consensus MFE | -19.12 |
Energy contribution | -21.32 |
Covariance contribution | 2.20 |
Combinations/Pair | 1.10 |
Mean z-score | -2.68 |
Structure conservation index | 0.61 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814204 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 472337 102 + 22407834 GGCGUGUGAGAGAGAUAGCUCUCACAGGUGGUUGGAGGGGGUGUCUUCUUUUACACGGAAAGAAAAAUAUUGGUUAGCCUAUGUGUAAUCUAGGUUAAGAUG ..(((((((((((((((.((((..(((....)))..)))).)))).)))))))))))................((((((((.(......))))))))).... ( -33.50) >DroSec_CAF1 18172 102 + 1 GGCGUGUGAGGGAGAUAGCUCUCACAGGUGGUUGGAGGGGGUGUCUUUUUUUACACGGAAAGAAAACUUUUGGUUAGCCUAUGUGUAAACUAGGUUAAAAUG ..(((((((((((((((.((((..(((....)))..)))).)))).)))))))))))(((((....)))))..((((((((.((....)))))))))).... ( -33.20) >DroSim_CAF1 18125 102 + 1 GGCGUGUGAGGGAGAUAGCUCUCACAGGUGGUUGGAGGGGGUGUCUUUUUUUACACGGAAAGAAAACUUUUGGUUAGCCUAUGUGUAAACUAGGUUAAAAUG ..(((((((((((((((.((((..(((....)))..)))).)))).)))))))))))(((((....)))))..((((((((.((....)))))))))).... ( -33.20) >DroEre_CAF1 18640 95 + 1 UGUGCGCGAGUGAGAUAGCUCUCACAGGUGGUUGGAGGGGGUGUCUCGUUUUACACUGAAAGAAAACCAUUGCUUUGCCUAUGUGCAAUCUAA-------UG ..((((((.((((((....)))))).(((((((......(((((........))))).......)))))))..........))))))......-------.. ( -25.42) >DroYak_CAF1 18435 101 + 1 UGGGUGCGAGGGAGAUAGCUCUCACAGGUGGUUG-AGGGGGUGUCUCUUUUUACACGAAAAGAAAACCUUUGCCUUGGCUAUGUACAAUCUAAUUUUAAAUG ...(((((((((......)))))....(((((..-(((((((...(((((((....)))))))..))))...)))..)))))))))................ ( -30.90) >consensus GGCGUGUGAGGGAGAUAGCUCUCACAGGUGGUUGGAGGGGGUGUCUUUUUUUACACGGAAAGAAAACUUUUGGUUAGCCUAUGUGUAAUCUAGGUUAAAAUG ...((((((((((((((.((((..(((....)))..)))).)))))).)))))))).................((((((((.(......))))))))).... (-19.12 = -21.32 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:42 2006