Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,298,500 – 4,298,618 |
Length | 118 |
Max. P | 0.860286 |
Location | 4,298,500 – 4,298,618 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 93.31 |
Mean single sequence MFE | -24.64 |
Consensus MFE | -20.88 |
Energy contribution | -21.12 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.54 |
Structure conservation index | 0.85 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4298500 118 + 22407834 AUUAAGCUGACGCUUACAAUUUCUCUCAGUGACUCCUGAGUGCAUUCCUCUGCAUAACCAUAGUUUCCGGACCGCACACAUUCACCGACUUUGAAUGGGAUAACUGAUUUGAAAACCA ..(((((....)))))...((((..(((((...(((...((((..(((...((.........))....)))..)))).((((((.......)))))))))..)))))...)))).... ( -27.50) >DroSec_CAF1 52655 118 + 1 AUUAAGCUGACGCUUACAAUUUCUCUCAGUGACUCCUGAGUGCAUUCCUUUGCAUAACCAUAGUUUCCGGACCGCACACAUUCACCGACUUUGAAUGGGAUAACUGAUUUGAAAACCA ..(((((....)))))...((((..(((((...(((...((((..(((...((.........))....)))..)))).((((((.......)))))))))..)))))...)))).... ( -27.50) >DroSim_CAF1 54113 118 + 1 AUUAAGCUGACGCUUACAAUUUCUCUCAGUGACUCCUGAGUGCAUUCCUCUGCAUAACCAUAGUUUCCGGACCGCACACAUUCACCGACUUUGAAUGGGAUAACUGAUUUGAAAACCA ..(((((....)))))...((((..(((((...(((...((((..(((...((.........))....)))..)))).((((((.......)))))))))..)))))...)))).... ( -27.50) >DroEre_CAF1 48871 106 + 1 AUU------------ACAAUUUCUCUCAGUGACUUCUGAGUGCAUUCCUCUGCAUAACCAUAGUUUCCGAACCACACACAUUCACCGACUUUGAAUGGGAUAACUGAUUUGAAAACCA ...------------....((((..(((((....(((..(((((......))))).......................((((((.......)))))))))..)))))...)))).... ( -18.30) >DroYak_CAF1 54113 118 + 1 AUUAAGCUGACGCUAACAAUUUCUCUCAGUGACUCCUGAGUGCAUUCCUCUGCAUAACCGUAGUUUCCAAACCACACACAUUCACCGACUUUGAAUGGGAUAACUGAUUUGAAAACCA ....(((....))).....((((..(((((...(((...(((((......)))))....((.(((....))).))...((((((.......)))))))))..)))))...)))).... ( -22.40) >consensus AUUAAGCUGACGCUUACAAUUUCUCUCAGUGACUCCUGAGUGCAUUCCUCUGCAUAACCAUAGUUUCCGGACCGCACACAUUCACCGACUUUGAAUGGGAUAACUGAUUUGAAAACCA ..(((((....)))))...((((..(((((...(((...(((((......))))).......................((((((.......)))))))))..)))))...)))).... (-20.88 = -21.12 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:19 2006