Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,297,505 – 4,297,596 |
Length | 91 |
Max. P | 0.752126 |
Location | 4,297,505 – 4,297,596 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 96.70 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -26.38 |
Energy contribution | -26.58 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.35 |
Structure conservation index | 0.90 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.752126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4297505 91 - 22407834 GUGUCGGUAAUAGGGUUAAGCAAACUACCAAUGUCCGAAGGCAAUUGUUCGGGCAGGCAAACCGCUCUUGAUUGGAACGUUGUCCGGCAAA .((((((((((..((((.....)))).((((((((((((.(....).))))))).(((.....)))....)))))...)))).)))))).. ( -26.90) >DroSec_CAF1 51651 91 - 1 GUGUCGGUAAUAGGGUUAAGCAAACUACCAAUGUCCGAAGGCAAUUGUUCGGGCAGGCAAACCGCUCUUGAUUGGGACGUUGUCCGGCAAA .((((((((((..((((.....)))).((((((((((((.(....).))))))).(((.....)))....)))))...)))).)))))).. ( -27.10) >DroSim_CAF1 53111 91 - 1 UUGUCGGUAAUAGGGUUAAGCAAACUACCAAUGUCCGAAGGCAAUUGUUCGGGCAGGCAAACCGCUCUUGAUUGGGACGUUGUCCGGCAAA (((((((((((..((((.....)))).((((((((((((.(....).))))))).(((.....)))....)))))...)))).))))))). ( -27.80) >DroEre_CAF1 47919 91 - 1 GUGUCGGUAAUAGGGUUAAGCAAACUACCAAUGUCCGAAGGCAAUUGUUCGGGCAGGCGAACCGCUCUUGAUUGGGGCGUUGUCCGGCAAA .((((((((((..((((..((..........((((((((.(....).)))))))).)).))))(((((.....))))))))).)))))).. ( -31.50) >DroYak_CAF1 53104 91 - 1 GUGUCGGUAAUAGGGUUAAGCAAACUACCCAUGUCCGAAGGCAAUUGUUCGGGCGGGCAGACCGCUCUUGAUUGGGGCGUUGUCCGGCAAA .((((.......((((..........))))..(((((((.(....).)))))))((((((..((((((.....)))))))))))))))).. ( -33.70) >consensus GUGUCGGUAAUAGGGUUAAGCAAACUACCAAUGUCCGAAGGCAAUUGUUCGGGCAGGCAAACCGCUCUUGAUUGGGACGUUGUCCGGCAAA .((((((((((..((((.....)))).((((((((((((.(....).))))))).(((.....)))....)))))...)))).)))))).. (-26.38 = -26.58 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:18 2006