| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,289,571 – 4,289,663 |
| Length | 92 |
| Max. P | 0.968064 |
| Location | 4,289,571 – 4,289,663 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 74.19 |
| Mean single sequence MFE | -24.58 |
| Consensus MFE | -8.18 |
| Energy contribution | -9.74 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.33 |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.968064 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4289571 92 - 22407834 CGGGCGGGUGAAGGAAAACA------AAAAAAAAACAAACGGGAUUCGGGCAAAAAAGUUUAGCACUCGACGC-UCGACUUGGCUAAAG-GAUCCCAGGG ....................------..............(((((((.(((....(((((.(((.......))-).))))).)))...)-)))))).... ( -23.30) >DroVir_CAF1 21376 80 - 1 C-------UGAAGUAC------AGAGAAAAAUUCCUAAAGGAGUUUCAGGCAAAAAACAUUAGCAUUCAACUC---AAGGCGAU-AAAGCCC---CGCCC .-------........------.(((..(((((((....)))))))...((...........))......)))---..((((..-.......---)))). ( -14.10) >DroSec_CAF1 43897 89 - 1 CGGGCGGGUGAAGAAA----------AAAAAACGCCAAACGGGAUUCGGGCAAAAAAGUUUAGCACUCGACGCCUCGACUUGGCUAAAG-GAUCCCAGGG ..((((..(.......----------...)..))))....(((((((.(((....(((((..((.......))...))))).)))...)-)))))).... ( -26.70) >DroSim_CAF1 45276 90 - 1 CGGGCGGGUGAAGAAA--GA------AAAAAACGCCAAACGGGAUUCGGGCAAAAAAGUUUAGCACUCGACGC-UCGACUUGGCUAAAG-GAUCCCAGGG ..((((..(.......--..------...)..))))....(((((((.(((....(((((.(((.......))-).))))).)))...)-)))))).... ( -29.90) >DroYak_CAF1 44915 97 - 1 CGGGCGGGUGAAAAAAAAAAAG-AAGAAAAAACGCCAAACGGGAUUCGGGCAAAAAAGUUUAGCACUCGACGC-UCGACUUGGCUAAAG-GAUCCCUGGG ..((((..(.............-......)..))))....(((((((.(((....(((((.(((.......))-).))))).)))...)-)))))).... ( -28.91) >consensus CGGGCGGGUGAAGAAA___A______AAAAAACGCCAAACGGGAUUCGGGCAAAAAAGUUUAGCACUCGACGC_UCGACUUGGCUAAAG_GAUCCCAGGG ........................................((((((..(((....(((((..((.......))...))))).))).....)))))).... ( -8.18 = -9.74 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:17 2006