Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,279,591 – 4,279,700 |
Length | 109 |
Max. P | 0.599092 |
Location | 4,279,591 – 4,279,700 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 88.28 |
Mean single sequence MFE | -37.80 |
Consensus MFE | -27.26 |
Energy contribution | -27.14 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.16 |
Mean z-score | -1.76 |
Structure conservation index | 0.72 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599092 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4279591 109 + 22407834 UG--GGGCAGCAAACAAGUUUGGUGGAGGAUGAAGCCACCGGACGAGAGGGAUAUCAUUCACUCCACCAAAGACGGCAUCUUCGUCAUCGCA--UCCCU------CCGAUUCCACGGAA .(--(((..((.......(((((((((((((((..((..(......)..))...))).)).))))))))))(((((.....)))))...)).--))))(------(((......)))). ( -39.10) >DroSec_CAF1 34030 104 + 1 UG--GGGCAGCAAACAAGUUUGGUGGAGG---AAGCCACCGGACGA--GGGAUAUCAUUCACUCCACCGAAGACGGCAUCUUCGUCAUCGCA--UCCCU------CCGACUCCACGGAA ((--((((.........(((((((((...---...)))))))))((--(((((....(((........)))(((((.....))))).....)--)))))------).).)))))..... ( -36.50) >DroSim_CAF1 35397 104 + 1 UG--GGGCAGCAAACAAGUUUGGUGGAGG---AAGCCACCGGACGA--GGGAUAUCAUUCACUCCACCAAAGACGGCAUCUUCGUCAUCGCA--UCCCU------CCGACUCCACGGAA .(--(((..((.......(((((((((((---((.((..(....).--.))......))).))))))))))(((((.....)))))...)).--))))(------(((......)))). ( -36.50) >DroEre_CAF1 29857 108 + 1 UG--GGGCAGCAAACCAGUUUGGUGGUGG---AAGCCACCGGACGA--GGGCUAUCAUUCACUCCGCCAAAGACGGCAUCUUCGUCAUCGCU--UCC--CUUCCUUCGACUCCACGGAA .(--(((.(((......((((((((((..---..))))))))))((--.(((.............)))...(((((.....))))).)))))--.))--))...((((......)))). ( -35.92) >DroYak_CAF1 34532 114 + 1 AGGGGGGCAGCAAACAAGUUUGGUGGAGG---AAGCCACCGGACGA--GGGAUAUCAUUCACUCCGCCAAAGACGACAUCUUCGUCAUCGAGUAUCCCUCCUCCGCCGACUCCACGGAA .((((((..((.......(((((((((((---((.((..(....).--.))......))).))))))))))(((((.....))))).....))..))))))((((.........)))). ( -41.00) >consensus UG__GGGCAGCAAACAAGUUUGGUGGAGG___AAGCCACCGGACGA__GGGAUAUCAUUCACUCCACCAAAGACGGCAUCUUCGUCAUCGCA__UCCCU______CCGACUCCACGGAA ....(((..((.......((((((((((..........((........))...........))))))))))(((((.....)))))...))....))).......(((......))).. (-27.26 = -27.14 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:14 2006