Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,277,685 – 4,277,776 |
Length | 91 |
Max. P | 0.867559 |
Location | 4,277,685 – 4,277,776 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 69.09 |
Mean single sequence MFE | -10.87 |
Consensus MFE | -6.89 |
Energy contribution | -7.00 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.17 |
Mean z-score | -1.37 |
Structure conservation index | 0.63 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.867559 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4277685 91 - 22407834 ----------------------GUGUGCACAAGCACACUAAUAAAAAAUGCUUAUCCUCCACUUAAAAUGUAAAUAAAACAAAAUUAUAAUCUCACCUUGAAUAACUUACGAA ----------------------((((((....))))))........................................................................... ( -9.10) >DroSim_CAF1 33462 84 - 1 ----------------------GUGUGCACAAGUACACUAACAAAAAAGGCUUAUUCUCUACUUAUGAAGUAAAUAAAACGAAAUUAUAAUCUCA-------UAAUUUUCGAA ----------------------((((((....))))))..........(..(((((..((.(....).))..)))))..)((((((((......)-------))))))).... ( -12.20) >DroEre_CAF1 27878 113 - 1 AAUUUCUAUGUACACCACUCUUGGGUGCACAAGCACACUUACAAAAAAAGCUUAGCCUUUACUUAUAAUGCAAAUAAAACAUAAUCAUAAUCUCACCUUGUAUAAUUUUCAAA ........(((((((((....)))((((....))))..............................................................))))))......... ( -11.30) >consensus ______________________GUGUGCACAAGCACACUAACAAAAAAAGCUUAUCCUCUACUUAUAAUGUAAAUAAAACAAAAUUAUAAUCUCACCUUG_AUAAUUUUCGAA ......................((((((....))))))........................................................................... ( -6.89 = -7.00 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:13 2006