Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,273,221 – 4,273,311 |
Length | 90 |
Max. P | 0.588758 |
Location | 4,273,221 – 4,273,311 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 87.14 |
Mean single sequence MFE | -27.68 |
Consensus MFE | -18.74 |
Energy contribution | -19.74 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 0.68 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4273221 90 + 22407834 GUGGAAA-AACCCACAA----AGGCGCAUCGGACUGCCAGAUGCCACAAACGACAAGUGGGU----------GGCCAAAGGUACAUAGAAGGUACAAGGUCUUAG ((((...-...))))..----.((((((((((....)).)))))(((..((.....))..))----------))))....((((.......)))).......... ( -26.40) >DroSec_CAF1 27795 90 + 1 GGGGAAA-AACCCACAA----AGGCGCAUCGGGCUGCCAGAUGCCACAAACGACAAGUGGGU----------AGCCAAAGGUACAUAGAAGGUACAAGGUCUUAG (((....-..)))...(----((((......(((((((...((.(......).))....)))----------))))....((((.......))))...))))).. ( -25.60) >DroSim_CAF1 29047 90 + 1 GGGGAAA-AAGCCACAA----AGGCGCAUCGGGCUGCCAGAUGCCACAAACGACAAGUGGGU----------GGCCAAAGGUACAUAGAAGGUACAAGGUCUUAG .......-(((((....----.((((((((((....)).)))))(((..((.....))..))----------))))....((((.......))))..)).))).. ( -24.80) >DroEre_CAF1 23395 101 + 1 GGGGAAAAAACCCACAA----AGGCGCAUCGGACUGCCAGAUGCCACAAACGGCAAGUGGGUGGCAAAAGCUGGCCAAAGGUACAUACAAGGUACAAGGUCUUAC (((.......)))....----.........((((((((((.((((((..((.....))..))))))....))))).....((((.......))))..)))))... ( -33.00) >DroYak_CAF1 27983 98 + 1 GGUGAAAGGAGCCACAAAGAAAGGCGCAUCGGACUGCCAGAUGCCACAAACGGCAAGUGGGUGG-------UGGCCAAAGGUACAUACAAGGACCAAGGUCUUGG .(((....(.(((((..........(((((((....)).)))))(((..((.....))..))))-------))))).....))).....(((((....))))).. ( -28.60) >consensus GGGGAAA_AACCCACAA____AGGCGCAUCGGACUGCCAGAUGCCACAAACGACAAGUGGGU__________GGCCAAAGGUACAUAGAAGGUACAAGGUCUUAG .........((((((........(.(((((((....)).)))))).(....)....))))))..........((((....((((.......))))..)))).... (-18.74 = -19.74 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:12 2006