Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,271,107 – 4,271,200 |
Length | 93 |
Max. P | 0.963211 |
Location | 4,271,107 – 4,271,200 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 90.11 |
Mean single sequence MFE | -27.06 |
Consensus MFE | -20.86 |
Energy contribution | -21.86 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.45 |
Structure conservation index | 0.77 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963211 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4271107 93 + 22407834 GAAACUCUAACCACAAUGGCUCAGACACAAUGUUUGGGUCUAUCUGGGCGAUGCAGAAGCGCAGACCUAUCUGCAACAAUGCAGUGGAAACAA ..........((((...(((((((((.....)))))))))...........((((.....(((((....))))).....))))))))...... ( -28.30) >DroSec_CAF1 25685 93 + 1 GAAACUCUAACCACAAUGGCUCAGACACAAUGUUUGGGUCUAUCUGGGCGAUGCAGAAGCGCAGACCUAGCUGCAAAAAUGCAGUAGAAACAA .....((((........(((((((((.....)))))))))...(((((...(((......)))..)))))(((((....)))))))))..... ( -26.80) >DroSim_CAF1 26959 93 + 1 GAAACUCUAACCACAAUGGCUCAGACACAAUGUUUGGGUCUAUCUGGGCGAUGCAGAAGCGCAGACCUAGCUGCAAAAAUGCAGUGGAAACAA ..........((((...(((((((((.....)))))))))...(((((...(((......)))..))))).((((....))))))))...... ( -28.70) >DroEre_CAF1 21233 93 + 1 GAAACUCUAACCACAAUGGCUCAGACACAAUGUUUGGGUCUAUCUGGGCGAUGCAGCAGCGCAGACCUAUUUGCGAAAGUGCAGUGGAAACAA ..........((((...(((((((((.....)))))))))...........((((....((((((....))))))....))))))))...... ( -28.30) >DroYak_CAF1 24268 81 + 1 GAAACUCUAACCACAAUGGCUCAGACACAAUGUUUGUGUAUAUCUGGGCGCUGCAGAAGCGCA------------AAAGUGCAGUGGCAACAA ..........((((....(((((((((((.....))))....))))))).........((((.------------...)))).))))...... ( -23.20) >consensus GAAACUCUAACCACAAUGGCUCAGACACAAUGUUUGGGUCUAUCUGGGCGAUGCAGAAGCGCAGACCUAGCUGCAAAAAUGCAGUGGAAACAA ..........((((...(((((((((.....)))))))))..((((.((.........)).))))..................))))...... (-20.86 = -21.86 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:08 2006