Locus 1590

Sequence ID 2L_DroMel_CAF1
Location 4,270,359 – 4,270,456
Length 97
Max. P 0.564496
window2555

overview

Window 5

Location 4,270,359 – 4,270,456
Length 97
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 74.77
Mean single sequence MFE -24.28
Consensus MFE -0.60
Energy contribution -2.04
Covariance contribution 1.44
Combinations/Pair 1.14
Mean z-score -1.24
Structure conservation index 0.02
SVM decision value 0.06
SVM RNA-class probability 0.564496
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4270359 97 + 22407834
UCUGUGGCCUUUUUUUUUUGCUAGCUACUGAUUCCACUUCAGCUUGGCGGUUCUGGAAUGGGAUGGCC-CCCAUCCAGCUACAAACGACAUUUUGCCC
..((((((.........(((((((...((((.......)))).)))))))...((((.((((......-))))))))))))))............... ( -25.60)
>DroSec_CAF1 24958 84 + 1
UCUC-----UUUUUUUUUUGCUGGCGACGGAUUCCACUUCAGCUUGG--------AAAUGGGAUGGCC-CCCACCCAGCCACAAACGACAUUUUGCCC
....-----.......((((.((((......(((((........)))--------)).((((.(((..-.)))))))))))))))............. ( -19.90)
>DroSim_CAF1 26222 84 + 1
UUUGUGGGUUUUUUUUUUUGCUG------GAUUCCACUUCAGCUUGG--------AAAUGGGAUGGCCCCCCACCCAGCCACAAACGACAUUUUGCCC
(((((((.....(((((..((((------((......))))))..))--------)))((((.(((....))))))).)))))))............. ( -25.50)
>DroEre_CAF1 20488 90 + 1
UAUGGGG----CGUUUUUUGCCAGCCACUGAUUCCACUUCAGCUCGGCGGUCGAGAAAA--G-UUGGU-CCCACCCAUCCAGAAACGACAUUUUGCCC
..(((((----(.(((((((((.(((.((((.......))))...))))).))))))).--.-...))-))))......(((((......)))))... ( -23.60)
>DroYak_CAF1 23480 93 + 1
UAUGGGGG-UGUUUUUUUUGCUAGGCCCUGAUUCCACUUGAGCUCGGCGGUUCAGAAAA--G-UUGCG-CCCACCCACCCACAAACGACAUUUUGCCC
...(((((-(((..(((((.((..((((((((((.....))).)))).)))..))))))--)-..)))-))).))....................... ( -26.80)
>consensus
UAUGGGG__UUUUUUUUUUGCUAGCCACUGAUUCCACUUCAGCUUGGCGGU___GAAAUGGGAUGGCC_CCCACCCAGCCACAAACGACAUUUUGCCC
..........................................................((((.(((....)))))))..................... ( -0.60 =  -2.04 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:07 2006