| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 464,883 – 464,994 |
| Length | 111 |
| Max. P | 0.570719 |
| Location | 464,883 – 464,994 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 80.53 |
| Mean single sequence MFE | -30.58 |
| Consensus MFE | -19.62 |
| Energy contribution | -19.32 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 464883 111 - 22407834 UUUCUAUUUGCAUUGACUUUAUCUUAAAUUCCAACAUAAUUACCUCUU-------UGCAGCCAACAAGAUGCAAGCGGUCAUGGACACGGCCGCUAUGGCCAUUGCCAUGGGAUCGUC .............................(((.........(((.(((-------.(((..........)))))).)))(((((....((((.....))))....))))))))..... ( -24.10) >DroSec_CAF1 10957 111 - 1 UUUCUAUUUGCAUUGACUUUAUGUUAAAUUCCAACAUAAUUACCUCUU-------UGCAGCCAACAAGAUGCAAGCGGUCAUGGACACGGCCGCUAUGGCCAUCGCCAUGGGAUCGUC .......(((((..((..(((((((.......))))))).....))..-------))))).......(((.(.(((((((........)))))))(((((....))))).).)))... ( -29.90) >DroSim_CAF1 10876 111 - 1 UUUCUAUUUGCAUUGACUUUAUGUUAAAUUCCAAAAUAAUUACCUCUU-------UGCAGCCAACAAGAUGCAAGCGGUCAUGGACACGGCCGCUAUGGCCAUCGCCAUGGGAUCGUC ............(((((.....)))))..(((.........(((.(((-------.(((..........)))))).)))(((((....((((.....))))....))))))))..... ( -26.50) >DroEre_CAF1 11023 110 - 1 UUGC-AUUUACGUUGACUUUAUGUUAAAUUGCAAUGUAAUUACCUCUU-------UGCAGUCAACAAGAUGCAAGCGGUCAUGGACACGGCCGCUAUGGCCAUCGCCAUGGGAUCGUC ((((-((((..((((((....(((......))).(((((........)-------)))))))))).))))))))((((((..((......)).(((((((....))))))))))))). ( -36.50) >DroYak_CAF1 11050 111 - 1 UUUCUGGUUACAUCGACUUUAUGUUAAAUUCCAACGUAAUUGCCUCUU-------UGCAGCCAACAAGAUGCAAGCCGUCAUGGACACGGCCGCCAUGGCCAUCGCCAUGGGGUCGUC .....((((.((((....(((((((.......)))))))((((.....-------.)))).......))))..))))(((...)))((((((.(((((((....))))))))))))). ( -35.50) >DroPer_CAF1 12597 97 - 1 CAUAA---AACAUUGGCCUUCU----------------CUUUUCUCUUUCGUGACUGCAGCCGUCAGCAUGCAAGCGGCGAUGGACACGGCCGCCAUGGCCAUUGCCGUGGGUG--UC .....---.((((.((((...(----------------((..((......((....)).(((((..(....)..))))))).)))...)))).(((((((....))))))))))--). ( -31.00) >consensus UUUCUAUUUACAUUGACUUUAUGUUAAAUUCCAACAUAAUUACCUCUU_______UGCAGCCAACAAGAUGCAAGCGGUCAUGGACACGGCCGCUAUGGCCAUCGCCAUGGGAUCGUC ..........................................((...........((((..........)))).((((((........))))))((((((....))))))))...... (-19.62 = -19.32 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:41 2006