Locus 1589

Sequence ID	2L_DroMel_CAF1
Location	4,267,731 – 4,267,840
Length	109
Max. P	0.559269

overview

Window 4

Location	4,267,731 – 4,267,840
Length	109
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	83.80
Mean single sequence MFE	-20.62
Consensus MFE	-17.66
Energy contribution	-17.98
Covariance contribution	0.31
Combinations/Pair	1.03
Mean z-score	-1.41
Structure conservation index	0.86
SVM decision value	0.05
SVM RNA-class probability	0.559269
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4267731 109 + 22407834
UAUAUUU------UAGUAUAUAAAUAUUUUCAUUUCAUUCUCAAAGACUCGUUGAGCUAUAAUUAAUGGAUUUCCAAUGAUUUGGCACCCCAAGCAUUUUCUUUCAGGGUUAAAC
(((((..------....)))))..........(((.(((((.(((((...(((..((((.(((((.(((....))).)))))))))......)))....))))).))))).))). ( -14.90)
>DroSim_CAF1 23640 112 + 1
CAUAUAUAAAU---AGUAUAUAAAUAUUUUCAUUUCAUUCUCAAAGACUCGUUGAGCUAUAAUUAAUGGAUUUCCAAUGAUUUGGCACCCCAAGCAUUUUCUUUCAGGGUUAAAC
.((((((....---.))))))...........(((.(((((.(((((...(((..((((.(((((.(((....))).)))))))))......)))....))))).))))).))). ( -16.00)
>DroEre_CAF1 17914 115 + 1
CAUACAUUAAAGGCAGUAUAUAAAUGUUUUUAUUUCAUUCUGAAAGACUUGUUCAGCUAUAAUUAAUGGAUUUCCAAUGAUUUGGCACGCCAAGCAUUUUCUUUCAGGGUUAAAC
.......((((((((.........))))))))(((.(((((((((((((((....((((.(((((.(((....))).)))))))))....)))).....))))))))))).))). ( -26.90)
>DroYak_CAF1 20869 95 + 1
G--------------------AUAUAUUUUUGUUUCAUUCUGAAGGACUCGUUCAGCUAUAAUUAAUGGAUUUCCAAUGAUUUGGCGCCCCAAGCAUUUUCUUUCAGGGUUAAAC
.--------------------..........((((.(((((((((((........((((.(((((.(((....))).)))))))))((.....))....))))))))))).)))) ( -24.70)
>consensus
CAUAUAU_______AGUAUAUAAAUAUUUUCAUUUCAUUCUCAAAGACUCGUUCAGCUAUAAUUAAUGGAUUUCCAAUGAUUUGGCACCCCAAGCAUUUUCUUUCAGGGUUAAAC
................................(((.(((((((((((...(((..((((.(((((.(((....))).)))))))))......)))....))))))))))).))). (-17.66 = -17.98 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:06 2006