Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,265,957 – 4,266,070 |
Length | 113 |
Max. P | 0.767297 |
Location | 4,265,957 – 4,266,070 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 79.10 |
Mean single sequence MFE | -26.05 |
Consensus MFE | -15.34 |
Energy contribution | -16.20 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.04 |
Mean z-score | -1.88 |
Structure conservation index | 0.59 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767297 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4265957 113 + 22407834 UGCU--UUCGUCCUGCUGGCAAGUGGAAAGUGCUUACAUUUUUCUGGCAGCGGAAAUGCAUAUUGCUUCCGGCCUUU-UA-UUCAUUUCCCCUUUGCAUUUUUUGCGCAUUUGCCUC .((.--........)).(((((((((((((((....))))))))..((((.(((((((.(((..((.....))....-))-).))))))).))..(((.....)))))))))))).. ( -29.70) >DroVir_CAF1 4379 100 + 1 CACU------UUUCUGUGGCAAGUGCAAAGUGCUUACAUUUUUCUGGCAACGGAAAUUCGCAUUGCUUCCGGU-UUUUUGCUUCAACUCCUUUUUACUUCGACUGCG---------- (((.------.....)))(((.((.(.(((((........((((((....))))))...(((..((.....))-....))).............))))).)))))).---------- ( -19.20) >DroPse_CAF1 37310 107 + 1 UGCCAACACAUCGGUCUGGCAAGUGGAAAGUGCUUACAUUUUUCUGGCAGCGGAAAUGCAUAUUGCUUCCGGCCUUU-UA-UUCAUUUCCCCUUUGCAUUUUUUGC--------CUC (((((((......)).))))).(..((((((((...((......))..((.(((((((.(((..((.....))....-))-).))))))).))..))))))))..)--------... ( -27.50) >DroEre_CAF1 16029 113 + 1 CGCU--UUCCUCCUGCUGGCAAGUGGAAAGUGCUUACAUUUUUCUGGCAGCGGAAAUGCAUAUUGCUUCCGGCCUUU-UA-UUCAUUUCCCCUUUGCAUUUUUUGCGCAUUUGCCUC ((((--((((.(.((....)).).)))))))).............(((((((((((((.(((..((.....))....-))-).))))))).....(((.....)))))...)))).. ( -31.50) >DroWil_CAF1 9751 96 + 1 CGCU--U---------UGGCAAGUGCAAAGUGCUUACAUUUUUCUGGCAACGGAAAUGCAUAUUGCUUCCGGCCUUU-UA-UUCAUUUCCCUUAUGCAUUUUUUUU--------GUC .(((--.---------.(((((((((((((((....)))))(((((....))))).))))).)))))...)))....-..-.........................--------... ( -20.90) >DroPer_CAF1 37151 107 + 1 UGCCAACACAUCGGUCUGGCAAGUGGAAAGUGCUUACAUUUUUCUGGCAGCGGAAAUGCAUAUUGCUUCCGGCCUUU-UA-UUCAUUUCCCCUUUGCAUUUUUUGC--------CUC (((((((......)).))))).(..((((((((...((......))..((.(((((((.(((..((.....))....-))-).))))))).))..))))))))..)--------... ( -27.50) >consensus CGCU__U_C_UCCGUCUGGCAAGUGGAAAGUGCUUACAUUUUUCUGGCAGCGGAAAUGCAUAUUGCUUCCGGCCUUU_UA_UUCAUUUCCCCUUUGCAUUUUUUGC________CUC ..................(((((.((((((((....)))))))).(((..(((((..((.....))))))))))..................))))).................... (-15.34 = -16.20 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:05 2006