Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,265,415 – 4,265,513 |
Length | 98 |
Max. P | 0.999938 |
Location | 4,265,415 – 4,265,513 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -19.12 |
Consensus MFE | -16.46 |
Energy contribution | -16.86 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.86 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.943808 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4265415 98 + 22407834 CCUCCAGCCAGCUCAGCCGGCUCUGCCCACUUUCAUCUAUUUUAAUAAAGUUAAAAGCCACCCGAAAAUGGCUUGAGCUCAUCUACACUGAAAAUAAA----- .........((((((((((((...)))...((((.....(((((((...))))))).......))))..))).))))))...................----- ( -17.60) >DroSec_CAF1 20054 103 + 1 CCUCCAGCCAGCUCAGCCGGCUCUGCCCACUUUCAUCUAUUUUAAUAAAGUUAAAAGCCACCCGAAAAUGGCUUGAGCUCAGCUACACUGAAAAUAAUUUAUG .....(((.((((((((((((...)))...((((.....(((((((...))))))).......))))..))).))))))..)))................... ( -20.70) >DroSim_CAF1 21295 103 + 1 CCUCCAGCCAGCUCAGCCGGCUCUGCCCACUUUCAUCUAUUUUAAUAAAGUUAAAAGCCACCCGAAAAUGGCUUGAGCUCAGCUACACUGAAAAUAAAGUAUU .....(((.((((((((((((...)))...((((.....(((((((...))))))).......))))..))).))))))..)))..(((........)))... ( -21.30) >DroEre_CAF1 15446 99 + 1 CCUCCAGCCAGCUCAGCCGGCUCUGCCCACUUUCAUCUAUUUUAAUAAAGUUAAAAGCCACCCGAAAAUGGCUUCAGCUCAGCUACACUGAAAAUAACG---- ....(((..((((.(((.(((...)))...........................((((((........))))))..))).))))...))).........---- ( -18.70) >DroYak_CAF1 18373 103 + 1 CCUCCAGCCAGCUCAACCGGCUCUGCCCACUUUCAUCUAUUUUAAUAAAGUUAAAAGCCACCCGAAAAUGGCUUCAGCUCAGCUACACUGAAAAUAAUGAAUU .....((((.........)))).........(((((.((((((.....((((..((((((........)))))).))))(((.....)))))))))))))).. ( -17.30) >consensus CCUCCAGCCAGCUCAGCCGGCUCUGCCCACUUUCAUCUAUUUUAAUAAAGUUAAAAGCCACCCGAAAAUGGCUUGAGCUCAGCUACACUGAAAAUAAAG_AU_ ....(((..((((.(((.(((...)))...........................((((((........))))))..))).))))...)))............. (-16.46 = -16.86 + 0.40)
Location | 4,265,415 – 4,265,513 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 94.44 |
Mean single sequence MFE | -32.58 |
Consensus MFE | -30.66 |
Energy contribution | -31.10 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -2.63 |
Structure conservation index | 0.94 |
SVM decision value | 4.68 |
SVM RNA-class probability | 0.999938 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4265415 98 - 22407834 -----UUUAUUUUCAGUGUAGAUGAGCUCAAGCCAUUUUCGGGUGGCUUUUAACUUUAUUAAAAUAGAUGAAAGUGGGCAGAGCCGGCUGAGCUGGCUGGAGG -----(((((((.......)))))))(((.(((((..(((((.(((((((..((((((((......)))).))))....))))))).))))).))))).))). ( -30.40) >DroSec_CAF1 20054 103 - 1 CAUAAAUUAUUUUCAGUGUAGCUGAGCUCAAGCCAUUUUCGGGUGGCUUUUAACUUUAUUAAAAUAGAUGAAAGUGGGCAGAGCCGGCUGAGCUGGCUGGAGG ...........(((((.....)))))(((.(((((..(((((.(((((((..((((((((......)))).))))....))))))).))))).))))).))). ( -33.60) >DroSim_CAF1 21295 103 - 1 AAUACUUUAUUUUCAGUGUAGCUGAGCUCAAGCCAUUUUCGGGUGGCUUUUAACUUUAUUAAAAUAGAUGAAAGUGGGCAGAGCCGGCUGAGCUGGCUGGAGG ....(((((...(((((.((((((.((((((((((((....))))))))...((((((((......)))).)))).....)))))))))).))))).))))). ( -34.10) >DroEre_CAF1 15446 99 - 1 ----CGUUAUUUUCAGUGUAGCUGAGCUGAAGCCAUUUUCGGGUGGCUUUUAACUUUAUUAAAAUAGAUGAAAGUGGGCAGAGCCGGCUGAGCUGGCUGGAGG ----......(((((((.(((((.(((((((((((((....)))))))))..((((((((......)))).)))).(((...))))))).)))))))))))). ( -33.60) >DroYak_CAF1 18373 103 - 1 AAUUCAUUAUUUUCAGUGUAGCUGAGCUGAAGCCAUUUUCGGGUGGCUUUUAACUUUAUUAAAAUAGAUGAAAGUGGGCAGAGCCGGUUGAGCUGGCUGGAGG ..........(((((((.(((((.(((((((((((((....)))))))))..((((((((......)))).)))).(((...))))))).)))))))))))). ( -31.20) >consensus _AU_CAUUAUUUUCAGUGUAGCUGAGCUCAAGCCAUUUUCGGGUGGCUUUUAACUUUAUUAAAAUAGAUGAAAGUGGGCAGAGCCGGCUGAGCUGGCUGGAGG ...........(((((.....)))))(((.(((((..(((((.(((((((..((((((((......)))).))))....))))))).))))).))))).))). (-30.66 = -31.10 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:04 2006