Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,264,194 – 4,264,284 |
Length | 90 |
Max. P | 0.973333 |
Location | 4,264,194 – 4,264,284 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 93.00 |
Mean single sequence MFE | -23.42 |
Consensus MFE | -19.32 |
Energy contribution | -19.56 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.67 |
Structure conservation index | 0.82 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.874206 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4264194 90 + 22407834 AAACCCGCACAAAGCCGGAAAACGUGGCAAUUGUGUGCUGGCCCAGCAUCUCAAACCCAUGUCCUCCUUCUACAUGGCACCUGGAGAAAA ......((((((.((((.......))))..))))))((((...)))).((((....((((((.........))))))......))))... ( -22.70) >DroSec_CAF1 18830 90 + 1 AAACCCGCACAAAGCCGGAAAACGUGGCAAUUGUGUGCUGUGCCAGCAUCUCAAACCCAUGUCCUCCUUCCACUUUGCACCUGGAGAAAA ....(((..(((((..(((..((((((...(((.((((((...))))))..)))..))))))..))).....)))))....)))...... ( -21.90) >DroSim_CAF1 20072 90 + 1 AAACCCGCACAAAGCCGGAAAACGUGGCAAUUGUGUGCUGGCCCAGCAUCUCAAACCCAUGUCCUCCUACUACUUUGCACUUGGAGAAAA ....(((..(((((..(((..((((((...(((.((((((...))))))..)))..))))))..))).....)))))....)))...... ( -21.90) >DroEre_CAF1 14155 90 + 1 AAACCCGCACAAAGCCGGAAAACGUGGCAAUUGAGUGCCGGCCCAGCAUCUCAAACCCACGUCCUCCUCUUACUGUGCACCUGGAGAAAA ......((((((((..(((..((((((...((((((((.......))).)))))..))))))..))).)))..)))))............ ( -28.00) >DroYak_CAF1 17110 90 + 1 AAACCCGCACAAAGCCGGAAAACGUGGCAAUUGUGUGCCGGCCCAGCAUCUCAAAACCAUGUCCUCCCUCUACUGUGCACCUGGAGAAAA ......(((((.((..(((..((((((...(((.((((.......))))..)))..))))))..)))..))..)))))............ ( -22.60) >consensus AAACCCGCACAAAGCCGGAAAACGUGGCAAUUGUGUGCUGGCCCAGCAUCUCAAACCCAUGUCCUCCUUCUACUUUGCACCUGGAGAAAA ...((.((.....)).))...((((((...(((.((((((...))))))..)))..)))))).((((...............)))).... (-19.32 = -19.56 + 0.24)
Location | 4,264,194 – 4,264,284 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 93.00 |
Mean single sequence MFE | -31.26 |
Consensus MFE | -28.72 |
Energy contribution | -29.28 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.58 |
Structure conservation index | 0.92 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973333 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4264194 90 - 22407834 UUUUCUCCAGGUGCCAUGUAGAAGGAGGACAUGGGUUUGAGAUGCUGGGCCAGCACACAAUUGCCACGUUUUCCGGCUUUGUGCGGGUUU ......((..(..(...((....(((((((.(((..(((.(.(((((...)))))).)))...))).))))))).))...)..).))... ( -24.80) >DroSec_CAF1 18830 90 - 1 UUUUCUCCAGGUGCAAAGUGGAAGGAGGACAUGGGUUUGAGAUGCUGGCACAGCACACAAUUGCCACGUUUUCCGGCUUUGUGCGGGUUU ......((..(..((((((....(((((((.(((..(((.(.(((((...)))))).)))...))).))))))).))))))..).))... ( -31.00) >DroSim_CAF1 20072 90 - 1 UUUUCUCCAAGUGCAAAGUAGUAGGAGGACAUGGGUUUGAGAUGCUGGGCCAGCACACAAUUGCCACGUUUUCCGGCUUUGUGCGGGUUU ......((..(..((((((....(((((((.(((..(((.(.(((((...)))))).)))...))).))))))).))))))..).))... ( -31.20) >DroEre_CAF1 14155 90 - 1 UUUUCUCCAGGUGCACAGUAAGAGGAGGACGUGGGUUUGAGAUGCUGGGCCGGCACUCAAUUGCCACGUUUUCCGGCUUUGUGCGGGUUU ......((..(..((.(((....(((((((((((..(((((.(((((...))))))))))...))))))))))).))).))..).))... ( -38.50) >DroYak_CAF1 17110 90 - 1 UUUUCUCCAGGUGCACAGUAGAGGGAGGACAUGGUUUUGAGAUGCUGGGCCGGCACACAAUUGCCACGUUUUCCGGCUUUGUGCGGGUUU ...........(((((((.((..(((((((.((((.(((.(.(((((...)))))).)))..)))).)))))))..)))))))))..... ( -30.80) >consensus UUUUCUCCAGGUGCAAAGUAGAAGGAGGACAUGGGUUUGAGAUGCUGGGCCAGCACACAAUUGCCACGUUUUCCGGCUUUGUGCGGGUUU ......((..(..((((((....(((((((.(((..(((.(.(((((...)))))).)))...))).))))))).))))))..).))... (-28.72 = -29.28 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:02 2006