Locus 1585

Sequence ID 2L_DroMel_CAF1
Location 4,263,985 – 4,264,083
Length 98
Max. P 0.837560
window2548

overview

Window 8

Location 4,263,985 – 4,264,083
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 96.24
Mean single sequence MFE -31.76
Consensus MFE -26.60
Energy contribution -26.48
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -1.70
Structure conservation index 0.84
SVM decision value 0.74
SVM RNA-class probability 0.837560
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4263985 98 - 22407834
UUGGGGCCGAAAACCAGUUGCCAGU-UGGCCAACAGCAAGCGACAGGAUAUCUGGCAGGAUAUCGUUCAUUAGAGCACUAGAAGUUGGCUCGCAGACGA
((((((((((......(((((..((-((.....))))..)))))(((((((((....)))))))((((....)))).)).....))))))).))).... ( -32.90)
>DroSec_CAF1 18619 98 - 1
UUGGGGCCGAAAACCAGUUGCCAGU-UGGCCAACAGCAAGCGACAGGAUAUCUGGCAGGAUAUCGUUCAUUAGAGCACUAGAAGUUGGCUCGCAGACGA
((((((((((......(((((..((-((.....))))..)))))(((((((((....)))))))((((....)))).)).....))))))).))).... ( -32.90)
>DroSim_CAF1 19863 98 - 1
UUGGGGCCGAAAACCAGUUGCCAGU-UGGCCAACAGCAAGCGACAGGAUAUCUGGCAGGAUAUCGUUCAUUAGAGCACUAGAAGUUGGCUCGCAGACGA
((((((((((......(((((..((-((.....))))..)))))(((((((((....)))))))((((....)))).)).....))))))).))).... ( -32.90)
>DroEre_CAF1 13946 98 - 1
UUGGGGCCGAAAACCAGUUGCCAGU-UACCCAACAGCAAGCGACAGGAUAUCUGGCAGGAUAUCGUUCAUUAGAGCACUAGAAGUUGGCUGGCAGGCGA
.....((((.....)...((((((.-...(((((............(((((((....)))))))((((....)))).......)))))))))))))).. ( -30.00)
>DroYak_CAF1 16890 99 - 1
UUGGGGCCGAAAACCAGUUGCCAGCAGAUCCAACAGCAAGCGACAGGAUAUCUGGCAGGAUAUCGUUCAUUAGAGCACUAGAAGUUGGCUCGCAAACGA
((((((((((...(.(((((((((...((((....(....)....))))..)))))).......((((....))))))).)...))))))).))).... ( -30.10)
>consensus
UUGGGGCCGAAAACCAGUUGCCAGU_UGGCCAACAGCAAGCGACAGGAUAUCUGGCAGGAUAUCGUUCAUUAGAGCACUAGAAGUUGGCUCGCAGACGA
((((((((((......(((((..((..........))..)))))(((((((((....)))))))((((....)))).)).....))))))).))).... (-26.60 = -26.48 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:01 2006