Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,262,324 – 4,262,418 |
Length | 94 |
Max. P | 0.808204 |
Location | 4,262,324 – 4,262,418 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 88.16 |
Mean single sequence MFE | -21.00 |
Consensus MFE | -17.99 |
Energy contribution | -17.77 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.92 |
Structure conservation index | 0.86 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808204 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4262324 94 - 22407834 ACGGAGGGAGG-----GCCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCC---AGCAACAGGA----CAACAAAAGCAA .....((....-----.))..((.((((((.(((....))).))))))((((.....))))....(((((((.....---.)))))))..----........)).. ( -20.00) >DroPse_CAF1 32997 102 - 1 ACUGA----AGCGCUCGCUACGCAAAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGACAACAGCAACAGCAACAGCAACAAUAGCAA ...(.----(((....))).)((.((((((.(((....))).))))))((((.....))))..(((((((((..(....).((....))....))))))))))).. ( -23.70) >DroSim_CAF1 18213 90 - 1 ACGGA----GG-----GCCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCC---AGCAACAGGA----CAACAAAAGCAA ..((.----..-----.))..((.((((((.(((....))).))))))((((.....))))....(((((((.....---.)))))))..----........)).. ( -20.00) >DroEre_CAF1 12279 90 - 1 ACUGA----GG-----GCCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCC---AGCAACAGGA----CAACAAAAGCAA .(((.----(.-----....).)))..((((...............((((((.....))))))..(((((((.....---.)))))))))----)).......... ( -19.60) >DroYak_CAF1 15132 90 - 1 ACAGA----GG-----GCCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCC---AGCAACAGGA----CAACAAAAGCAA .....----..-----.....((.((((((.(((....))).))))))((((.....))))....(((((((.....---.)))))))..----........)).. ( -19.00) >DroPer_CAF1 32946 102 - 1 ACUGA----AGCGCUCGCUACGCAAAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGACAACAGCAACAGCAACAGCAACAAUAGCAA ...(.----(((....))).)((.((((((.(((....))).))))))((((.....))))..(((((((((..(....).((....))....))))))))))).. ( -23.70) >consensus ACUGA____GG_____GCCACGCAGAGUGUCAAUAACAAUUUACACUUGAGACGAUAUCUCAAUAUUGUUGCACGCC___AGCAACAGGA____CAACAAAAGCAA .....................((.((((((.(((....))).))))))((((.....))))....(((((((.........)))))))..............)).. (-17.99 = -17.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:59 2006