Locus 1583

Sequence ID 2L_DroMel_CAF1
Location 4,259,450 – 4,259,565
Length 115
Max. P 0.708435
window2546

overview

Window 6

Location 4,259,450 – 4,259,565
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 82.09
Mean single sequence MFE -33.24
Consensus MFE -22.44
Energy contribution -23.60
Covariance contribution 1.16
Combinations/Pair 1.14
Mean z-score -1.83
Structure conservation index 0.68
SVM decision value 0.37
SVM RNA-class probability 0.708435
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4259450 115 - 22407834
AAGUGGGCGGGGCAAGGAGAAGAUGGAGGCGGAGGCGAAGGUGUUGGCGGUUAUGGAAGUGGGCGUGGCAGCCAAGUUGUUAGCACGCUCGACUGAUAUUAUUUUUUGCUCCUUU
........(((((((((((...((((..((.((.((....)).)).))..))))...(((((((((((((((...)))))...))))))).))).......)))))))))))... ( -38.70)
>DroSec_CAF1 14129 97 - 1
AAGUGGGCGGGGCAAG------------------GCGGAGGUGGUGGCGGUUAUGGAAGUGGGCGUGGCAGCCAAGUUGUUAGCACGCUCGACUGAUAUUAUUUUUUGCUCCUUU
........(((((((.------------------...(((((((((.(((((........((((((((((((...)))))...)))))))))))).))))))))))))))))... ( -30.60)
>DroSim_CAF1 15344 97 - 1
AAGUGGGCGGGGCAAG------------------GCGGAGGUGGUGGCGGUUAUGGAAGCGGGCGUGGCAGCCAAGUUGUUAGCACGCUCGACUGAUAUUAUUUUUUGCUCCUUU
........(((((((.------------------...(((((((((.(((((..(....)((((((((((((...)))))...)))))))))))).))))))))))))))))... ( -32.70)
>DroEre_CAF1 9382 91 - 1
AAGUGGGCGGGGCAAGAAGGUG------------GUGGAGGUU------------GAAGUGGGCGUGGCAGCCAAGUUGUUAGCACGCUCGACUGAUAUUAUUUUUUGCUCCUUU
........(((((((((((.((------------(((..((((------------((.(((.((.(((((((...))))))))).)))))))))..))))))))))))))))... ( -35.60)
>DroYak_CAF1 12196 98 - 1
AAGUGG-----GCAAGAAGAUG------------GUGGAGAUGAAGGCGGUUAUGAAAGUGGGCGUGGCAGCCAAGUUGUUAGCACGCUCGACUGAUAUUAUUUUUUGCUCCUUU
(((.((-----((((((.((((------------(((..........(((((((....))((((((((((((...)))))...)))))))))))).)))))))))))))))))). ( -28.60)
>consensus
AAGUGGGCGGGGCAAG_AG__G____________GCGGAGGUGGUGGCGGUUAUGGAAGUGGGCGUGGCAGCCAAGUUGUUAGCACGCUCGACUGAUAUUAUUUUUUGCUCCUUU
........(((((((((((...............((....))...............(((((((((((((((...)))))...)))))))).)).......)))))))))))... (-22.44 = -23.60 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:58 2006