| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,255,175 – 4,255,305 |
| Length | 130 |
| Max. P | 0.940002 |
| Location | 4,255,175 – 4,255,265 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 83.33 |
| Mean single sequence MFE | -31.68 |
| Consensus MFE | -24.71 |
| Energy contribution | -25.28 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.78 |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.940002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4255175 90 - 22407834 AUUGCUCUGAAAGGCCAACAACAGUGCCACCCAAGUGGCACAAGGCCUGCCC-----------------------CAUAUAUGAGAGUAUGCACAGACAGCAAUCGGAGGAUU ....((((((.(((((.......(((((((....)))))))..)))))....-----------------------..(((((....)))))............)))))).... ( -29.10) >DroSec_CAF1 9882 113 - 1 AUUGCUCUGAAAGGCCAACAACAGUGCCACCCAAGUGGCACAUGGCCUGCCCCAACUCAGUGAAACGCCACUAACCAUAUAUGAGAGAAUGCACAGACAGCAAUCGGAGGAUU ....((((((.((((((......(((((((....))))))).)))))).......(((((((......))))...((....)).)))..(((.......))).)))))).... ( -33.80) >DroSim_CAF1 11060 113 - 1 AUUGCUCUGAAAGGCCAACAACAGUGCCACCCAAGUGGCACAUGGCCUGCCCCAACUCAGUGAAACGCCACUAACCAUAUAUGAGAGAGUGCACAGACAGCAAUCGGAGGAUU ....((((((.((((((......(((((((....))))))).))))))((....((((((((......))))...((....))...))))))...........)))))).... ( -34.10) >DroYak_CAF1 7802 113 - 1 AUUGCCCUGAAAGGCCAACAACAGUGCCACCCAAGUGCCACAUGGCCUGCCCCAACUCCAUGAAGCGCCACUCACCAUAUAUGGGGAAAUGCACAGGCAGCAAUUGGAGCAUC (((((((((..((((((......(((.(((....))).))).)))))).(((((......(((........))).......))))).......))))..)))))......... ( -29.72) >consensus AUUGCUCUGAAAGGCCAACAACAGUGCCACCCAAGUGGCACAUGGCCUGCCCCAACUCAGUGAAACGCCACUAACCAUAUAUGAGAGAAUGCACAGACAGCAAUCGGAGGAUU ....((((((.((((((......(((((((....))))))).)))))).........................................(((.......))).)))))).... (-24.71 = -25.28 + 0.56)
| Location | 4,255,210 – 4,255,305 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 85.76 |
| Mean single sequence MFE | -30.90 |
| Consensus MFE | -25.52 |
| Energy contribution | -26.20 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.927193 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4255210 95 - 22407834 AUUUAUCAGCGCAUUUUUGGCAUUCAGCUUGCGUCCUGACAUUGCUCUGAAAGGCCAACAACAGUGCCACCCAAGUGGCACAAGGCCUGCCC-----------------------CAU ......(((.((....(((((.(((((...(((.........))).)))))..))))).....(((((((....)))))))...)))))...-----------------------... ( -29.80) >DroSec_CAF1 9917 118 - 1 AUUUAUCAGCGCAUUUUUGGCAUUCAGCUUGCGUCCUGACAUUGCUCUGAAAGGCCAACAACAGUGCCACCCAAGUGGCACAUGGCCUGCCCCAACUCAGUGAAACGCCACUAACCAU .....((((.(((......(((.......)))((....))..))).)))).((((((......(((((((....))))))).))))))..........((((......))))...... ( -33.60) >DroSim_CAF1 11095 118 - 1 AUUUAUCAGCGCAUUUUUGGCAUUCAGCUUGCGUCCUGACAUUGCUCUGAAAGGCCAACAACAGUGCCACCCAAGUGGCACAUGGCCUGCCCCAACUCAGUGAAACGCCACUAACCAU .....((((.(((......(((.......)))((....))..))).)))).((((((......(((((((....))))))).))))))..........((((......))))...... ( -33.60) >DroEre_CAF1 5244 112 - 1 AUUUAUCAGCGCAUUUUUGGCAUUCAGCUUGCGUCCUGACAUUGUCCUGAAAGACCAACAACAGUGCCACCCAAGUGGCACAUGGC------CAACUCCGUGAAACGCCGGCAACCAU ........((.((....)))).....(((.((((..(.((...(((......)))......(((((((((....))))))).))..------.......)).).)))).)))...... ( -27.40) >DroYak_CAF1 7837 118 - 1 AUUUAUCAGCGCAUUUUUGGCAUUCAGCUUGCGUCCUAGCAUUGCCCUGAAAGGCCAACAACAGUGCCACCCAAGUGCCACAUGGCCUGCCCCAACUCCAUGAAGCGCCACUCACCAU ........((((......(((.(((((..(((......))).....)))))((((((......(((.(((....))).))).))))))))).((......))..)))).......... ( -30.10) >consensus AUUUAUCAGCGCAUUUUUGGCAUUCAGCUUGCGUCCUGACAUUGCUCUGAAAGGCCAACAACAGUGCCACCCAAGUGGCACAUGGCCUGCCCCAACUCAGUGAAACGCCACUAACCAU .....((((.(((......(((.......)))((....))..))).)))).((((((......(((((((....))))))).)))))).............................. (-25.52 = -26.20 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:55 2006