Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,254,571 – 4,254,671 |
Length | 100 |
Max. P | 0.996375 |
Location | 4,254,571 – 4,254,671 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 75.39 |
Mean single sequence MFE | -26.35 |
Consensus MFE | -12.34 |
Energy contribution | -13.82 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.14 |
Mean z-score | -2.63 |
Structure conservation index | 0.47 |
SVM decision value | 2.69 |
SVM RNA-class probability | 0.996375 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4254571 100 + 22407834 AUUCUAUUUAGGGU-GUGGCCAAAGAAUGGGUUACGAACGACUCCAGCCUCCAUGCUGGGCCAACUCCCAUCAA---------ACCGG--UAUACAUACUCGUAUACUCAUU ..........(((.-.(((((.......(((((......)))))((((......)))))))))...))).....---------...((--(((((......))))))).... ( -30.10) >DroSec_CAF1 9270 100 + 1 AUUCUAUUUAGGGUCCUGGCCAAAGAAUGGGUUACGAACGACCCUAGCCUCCAUGCUGGGCCAAC----------UCCCAUCAUCCCG--UAUACAUACUCGUAUACUCAUU ..........(((...(((((.......(((((......)))))((((......)))))))))..----------.)))........(--(((((......))))))..... ( -29.90) >DroSim_CAF1 10435 110 + 1 AUUCUAUUUAGGGUCCUGGCCAAAGAAUGGGUUACGAACGACCCCAGCCUCCAUGCUGGGCCAACUCCCACCAACUCCCAUCAUCCGG--UAUACAUACUCGUAUACUCAUU ..........(((...(((((.......(((((......)))))((((......)))))))))...))).................((--(((((......))))))).... ( -32.30) >DroEre_CAF1 4620 95 + 1 AUUCUAUUUAGGGU-CUCGCCAAGAAAUGGGUUACGAACGAUCCCUGCCCCACUGCUAC----------------ACCCGUCAUCCAGCGGAUACAUACUCGUAUACUCAUU ...........((.-....))....((((((((((((...(((((((....((......----------------....))....))).))))......))))).))))))) ( -17.10) >DroYak_CAF1 7158 103 + 1 AUUCUAUUUAGGGU-CUUUCCAAGGAAUGGGUUAUGACCCCCUCCUGCCUCCCUGCCCCUCUGAGUCU------CUUCCCUUAUCCGG--UAUACAUACUCGUAUACUCAUU ((((......((((-.......((((..((((....))))..))))........))))....))))..------............((--(((((......))))))).... ( -22.36) >consensus AUUCUAUUUAGGGU_CUGGCCAAAGAAUGGGUUACGAACGACCCCAGCCUCCAUGCUGGGCCAACUC________UCCCAUCAUCCGG__UAUACAUACUCGUAUACUCAUU ...........(((....)))....((((((((((((.....((((((......))))))...........................(......)....))))).))))))) (-12.34 = -13.82 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:53 2006