Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,252,683 – 4,252,789 |
Length | 106 |
Max. P | 0.946869 |
Location | 4,252,683 – 4,252,789 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.55 |
Mean single sequence MFE | -30.98 |
Consensus MFE | -13.34 |
Energy contribution | -14.10 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.15 |
Mean z-score | -2.08 |
Structure conservation index | 0.43 |
SVM decision value | 1.37 |
SVM RNA-class probability | 0.946869 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4252683 106 + 22407834 ---GCUAUGUGCAAUGGUCUUGCAAAUCGAAUGUCAAUUUUCGAUUCAUUUCACGGAACACUUGAAUUGGUUUG-CAGGAA----------CAGGAACAGGAGGCAGCAAAGCAAUGGCA ---(((((((....((.(((((((((((((...((((.(((((..........)))))...)))).))))))))-))))).----------))...)).....((......)).))))). ( -28.50) >DroVir_CAF1 25174 104 + 1 ---GCAAUGUGCAAUGGUCUUGAAAAUUGAAUGUCAAUUUUCGACUCAUUUCACGGAACACUUGAAUUACUUUG-CUGAAAAUAGCGUAGUGAGGAGG-----UG----AA---CCUGCA ---(((..(((.(((((((..((((((((.....))))))))))).)))).)))((..(((((...(((((.((-(((....))))).)))))..)))-----))----..---))))). ( -33.70) >DroGri_CAF1 35374 109 + 1 ---GCAAUGUGCAAUCGUCUCGAAAAUUGAACGUCGAUUUUCGACUCAUUUCACGGAACACUUGAAUUAGUUUG-CUGGAAAUCGCUGAGUCAGGAACAGCAGGA----AA---AUUCCG ---....((((.(((.(..((((((((((.....))))))))))..)))).))))........(((((..((((-(((....((.(((...))))).))))))).----.)---)))).. ( -27.80) >DroWil_CAF1 39589 98 + 1 GUCGCCCUGUGCAAUGGUCUUGCAAAUCGAAUGUCAAUUUUCGACUCAUUUCACGGAACACUUGAAUUGCUUUGGCUCGAA----------GAGCAACG------------GCGACGGCU (((((((((((.(((((.....)...(((((........)))))..)))).)))))..........(((((((.......)----------)))))).)------------))))).... ( -29.30) >DroMoj_CAF1 24157 105 + 1 ---GCAAUGUGCAAUGGUCUCGAAAAUUGAAUGUCAAUUUUCGACUCAUUUCACGGAACACUUGAAUUAGUUUG-CUGAAAAUCGGGUGGCCAGAAGG--C--UG----AA---CCUGCG ---(((..(((.(((((..((((((((((.....)))))))))).))))).)))((..(((((((.((((....-))))...)))))))(((....))--)--..----..---))))). ( -35.60) >consensus ___GCAAUGUGCAAUGGUCUUGAAAAUUGAAUGUCAAUUUUCGACUCAUUUCACGGAACACUUGAAUUAGUUUG_CUGGAAAU_G____G_CAGGAAC_____GG____AA___ACUGCA ...(((.((((.(((((..((((((((((.....)))))))))).))))).))))((((..........))))...........................................))). (-13.34 = -14.10 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:52 2006