Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,243,439 – 4,243,536 |
Length | 97 |
Max. P | 0.507614 |
Location | 4,243,439 – 4,243,536 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -26.85 |
Consensus MFE | -21.26 |
Energy contribution | -22.13 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.04 |
Mean z-score | -1.65 |
Structure conservation index | 0.79 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4243439 97 - 22407834 GUUGGCGGCGGAGAGAGCUCCU-CUGCCAUGGAAAAAUAUAUAAAACAAAUUUAUAACAAAAACGUGAUGUGGUUAUUGAUGGAUGGCCUCGCUCCCG ..((((((.((((....)))).-)))))).(((......((((((.....))))))........((((...(((((((....)))))))))))))).. ( -27.70) >DroSec_CAF1 18483 97 - 1 GUGGGCGGCGGAGAGAGCUUCU-CUGCCAUGGAAAAAUAUAUAAAACAAAUUUAUAACAAAAACGUGAUGUGGUUAUUGAUGGAUGGCCUCGCUGCCG ...((((((((((((.....))-))(((((.........((((((.....)))))).(((.(((........))).)))....))))).)))))))). ( -28.20) >DroEre_CAF1 21633 98 - 1 GUGGGCGGCGGAGUGUGCUCCUUUUGCCAUGGAAAAAUAUAUAAAACAAAUUUAUAACAAAAACGUGAUGUGGUUAUUGAUGGAUGGCCUCGCUGCCA ...((((((((((....))))....(((((.........((((((.....)))))).(((.(((........))).)))....)))))...)))))). ( -28.10) >DroYak_CAF1 27257 97 - 1 GUGGGCGGCGGAGUUUGCUGCU-UUGCCAUGGAAAAAUAUAUAAAACAAAUUUAUAACAAAAACGUGAUGUGGUUAUUGAUGGAUGCCCUCGAUGCCA (.((((((((((((.....)))-))))).....................(((.(((((....((.....)).))))).)))....)))).)....... ( -23.40) >consensus GUGGGCGGCGGAGAGAGCUCCU_CUGCCAUGGAAAAAUAUAUAAAACAAAUUUAUAACAAAAACGUGAUGUGGUUAUUGAUGGAUGGCCUCGCUGCCA ...((((((((((....))))......((((........((((((.....)))))).......))))..(.(((((((....))))))).))))))). (-21.26 = -22.13 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:48 2006