| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,241,472 – 4,241,562 |
| Length | 90 |
| Max. P | 0.566951 |
| Location | 4,241,472 – 4,241,562 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 82.96 |
| Mean single sequence MFE | -29.84 |
| Consensus MFE | -22.66 |
| Energy contribution | -24.22 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4241472 90 - 22407834 GCCCCCUUUGUUUGG---GUAGACAGAAGGGGGGCGUGGUCGCCGCAUACGGCCAUAUACGGACUGUCGAAAUUUUGAAUUUUGAUUGGCAUC (((((((...((((.---.....)))).)))))))(((((((.......))))))).....(...((((((((.....))))))))...)... ( -32.20) >DroSec_CAF1 16558 87 - 1 GCCCCCUUUGUUUGG---GUGGACA---GGGGGGCGUGGUCGGCGCAUACGGCCGUAUACGGACUGUCGAAAUUUUGAAUUUUGAUUGGCAUC ((((((((.((((..---..)))))---)))))))(((..((((.......))))..))).(...((((((((.....))))))))...)... ( -31.60) >DroEre_CAF1 19512 81 - 1 GCCCCCUCGGUUUGG---GUGGAGA---GGGGGGCGUGGUCGGCGCAAACGGC------CGGACUGUCGAAAUUUUGAAUUUUGAUUGGCAUC .(((((((.......---.....))---)))))((.((((((.......))))------))..(.((((((((.....)))))))).)))... ( -29.80) >DroYak_CAF1 25128 75 - 1 GCCCCCUUUGUUUGGAGUGGGGAAA---GGGGGGCGUGGUCG---------GC------CGGACUGUCGAAAUUUUGAAUUUUGAUUGGCAUC (((((((((..............))---))))))).......---------((------((....((((((((.....))))))))))))... ( -25.74) >consensus GCCCCCUUUGUUUGG___GUGGACA___GGGGGGCGUGGUCGGCGCAUACGGC______CGGACUGUCGAAAUUUUGAAUUUUGAUUGGCAUC (((((((.(((((.......)))))...)))))))(((((((.......))))).........(.((((((((.....)))))))).)))... (-22.66 = -24.22 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:47 2006