Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,239,592 – 4,239,694 |
Length | 102 |
Max. P | 0.965049 |
Location | 4,239,592 – 4,239,694 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 87.90 |
Mean single sequence MFE | -28.00 |
Consensus MFE | -23.21 |
Energy contribution | -23.13 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.12 |
Mean z-score | -2.09 |
Structure conservation index | 0.83 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965049 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4239592 102 + 22407834 AGAUACGGGGCUUCCUAAGUGGCAGAUUACUUCGGAGU----GCGGUUCUGCACUAAAUACCACUACACAGAUGCAAAAUAAAAA-AAGCCCAUGUCAAUUGGAAUA .((((..((((((....(((((.......(....)(((----(((....)))))).....))))).((....))...........-)))))).)))).......... ( -24.70) >DroSec_CAF1 14705 103 + 1 AGAUACGGGGCUUCCUAAGUGGCAGAUUACUUGGGAGU----GCGGCUCUGCACUAAAUACCACUACACAGAUGCAAAAAAAAAAAGAGCCCAUGUCAAUUGGAAUA .((((..(((((((((((((((....)))))))))(((----(((....))))))...............................)))))).)))).......... ( -29.10) >DroSim_CAF1 21851 103 + 1 AGAUACGGGGCUUCCUAAGUGGCAGAUUACUUGGGAGU----GCGGCUCUGCACUAAAUACCACUACACAGAUGCAAAAAAAAAAACAGCCCAUGUCAAUUGGAAUA .((((..(((((((((((((((....))))))))))((----(((....))))).................................))))).)))).......... ( -28.20) >DroEre_CAF1 15103 98 + 1 AGAUACAGGGCUUCCUAAGUGGCAGAUUACUUGGGAGU----GCGGCUCUGCACUAAAUGCUGCUACACGGAAGCAAAA-----AACAGUCCAUGUCAAUUUGCAUA .((((..(((((((((((((((....))))))))))((----(..((...(((.....))).))..)))..........-----...))))).)))).......... ( -28.90) >DroYak_CAF1 23173 102 + 1 AGAUACAGGGCUUCCUAAGUGGCAGAUUACUUGGCAGCGGAGGCGGCUCUGCACAAAAUGCUUCUACACAGAUGCAAAA-----AACAGCCCAUGUCAAUUUGAAUA .((((..(((((..((((((((....))))))))..((((((....))))))......(((.(((....))).)))...-----...))))).)))).......... ( -29.10) >consensus AGAUACGGGGCUUCCUAAGUGGCAGAUUACUUGGGAGU____GCGGCUCUGCACUAAAUACCACUACACAGAUGCAAAA_AAAAAACAGCCCAUGUCAAUUGGAAUA .((((..(((((((((((((((....)))))))))).........((((((.................)))).))............))))).)))).......... (-23.21 = -23.13 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:46 2006