Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,233,140 – 4,233,256 |
Length | 116 |
Max. P | 0.742641 |
Location | 4,233,140 – 4,233,256 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 84.06 |
Mean single sequence MFE | -40.06 |
Consensus MFE | -32.40 |
Energy contribution | -32.64 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.72 |
Structure conservation index | 0.81 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742641 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4233140 116 - 22407834 ACCAGCGGUCGUCCUGUGGGAGUGGACAAGGACACGCCCACUUGUGGGAAGGACGGGAAAGAGGGA--GAGAUGGCAGGGAUGGACUGGUCAAAGUCGAGUCUGUCUGGCCAAUAAGC .((..(..((((((((((((.(((........))).)))))........)))))))....)..)).--....((((..(((((((((.(.......).))))))))).))))...... ( -42.60) >DroSec_CAF1 8286 113 - 1 ACCAUCGGUCGUCCUGUGGGAGUGGACAAGGACACGCCCACUUGUGUGGAGGA-----GAGAGGGACUGAGGGGGCAGAAAUGGACUGGUCAAAGUCGAGUCUGUCUGGCCAAUAAGC .((.(((((((((((.((........)))))))....((((....))))....-----......))))))))((.((((...(((((.(.......).))))).)))).))....... ( -40.50) >DroSim_CAF1 15282 99 - 1 ACCAUCGGUCGUCCUGUGGGAGUGGACAAGGACACGCCCACUUGUGGGGAGGG-------------------AAGCAGAGAUGGACUGGUCAAAGUCGAGUCUGUCUGGCCAAUAAGC ......((((.(((((((((.(((........))).))))).....))))...-------------------......(((((((((.(.......).)))))))))))))....... ( -33.90) >DroEre_CAF1 8461 105 - 1 ACCAUCGGUCGUCCUGUGGGAGUGGACAAGGACACGCCCACUUGUGGGUG----------GGGGG---AGAAUGGCAGAGAUGGACUGGUCAAAGUCGAGUCUGUCUGGCCAAUAAGC .(((((((....)).(((((.(((........))).))))).....))))----------)....---....((((..(((((((((.(.......).))))))))).))))...... ( -40.00) >DroYak_CAF1 16338 113 - 1 ACCAAUGGUCGUCCUGUGGGAGUGCACAAGGACACGCCCACUUGAGGGGAUGAGGA--GAGGGGG---GGGUUGGCAGAGAUGGACUGGUCAAAGUCGAGUCUGUCUGGCCAAUAAGC .((..(..((((((((((((.(((........))).))))).....)))))))..)--..))...---..((((((..(((((((((.(.......).))))))))).)))))).... ( -43.30) >consensus ACCAUCGGUCGUCCUGUGGGAGUGGACAAGGACACGCCCACUUGUGGGGAGGA______AGAGGG___GAGAUGGCAGAGAUGGACUGGUCAAAGUCGAGUCUGUCUGGCCAAUAAGC ......((((.(((.(((((.(((........))).)))))....))).........................((((((..(.((((......)))).).)))))).))))....... (-32.40 = -32.64 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:38 2006