Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,224,484 – 4,224,604 |
Length | 120 |
Max. P | 0.876389 |
Location | 4,224,484 – 4,224,604 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.16 |
Mean single sequence MFE | -24.73 |
Consensus MFE | -17.09 |
Energy contribution | -16.77 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.20 |
Mean z-score | -1.38 |
Structure conservation index | 0.69 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.876389 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4224484 120 + 22407834 UCCAUUGAUUUAGAAACCUUGUAUCUUUCCAAAAUGAGGUGAUAAUUAUCUGGGCCAUCUGGCCAGUAUAUAUGUACAUAUUUUCAAGCGCCCUGAUAAGCAAGCUUAUCUACCCAUUUG ......(((..((....))...)))......(((((.((((...........((((....)))).((((....))))...........))))..((((((....))))))....))))). ( -23.00) >DroSim_CAF1 6175 112 + 1 UCCAUAUAUGUAGAAACCUUGUAUCUUUCCGAAAUGAGGUGAUAAUUAUGUGGGCCAUCUGGCCAGUUUGUAUAUAU--------AGGCGCCCUGAUAAGCAAGCUUAUCUCCCCACUUG ..((((((..((...((((..(.((.....)).)..))))..))..))))))((((....))))(((((((.(((.(--------(((...))))))).))))))).............. ( -30.10) >DroYak_CAF1 6575 93 + 1 UCCAUA----UAGAACCUUAGUUUCAUUCCAAAACGAGGUGACCUUUAUCUGGGCCAUCUGGCCAGUUUC---------------------CCUGAUAAGCAAGCUUAUCUCC--GCCUU ......----..........((((.......))))((((((...........((((....))))......---------------------...((((((....))))))..)--))))) ( -21.10) >consensus UCCAUA_AU_UAGAAACCUUGUAUCUUUCCAAAAUGAGGUGAUAAUUAUCUGGGCCAUCUGGCCAGUUUAUAU_UA_________A_GCGCCCUGAUAAGCAAGCUUAUCUCCCCACUUG ....................................(((((...........((((....))))..............................((((((....))))))....))))). (-17.09 = -16.77 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:37 2006