Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,223,579 – 4,223,670 |
Length | 91 |
Max. P | 0.826111 |
Location | 4,223,579 – 4,223,670 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 90.20 |
Mean single sequence MFE | -39.23 |
Consensus MFE | -33.00 |
Energy contribution | -34.33 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.38 |
Structure conservation index | 0.84 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4223579 91 + 22407834 -----------UGCGGAUUGGGAGCCCAACAACAACCAGAAUCGGCGAGGCAACCUCAGCCGAGUCCCGCGACUCGCUGGCUGCCUCGUAAAACUGUCACUU -----------((..(.((((....)))))..))..(((.....((((((((...(((((.(((((....)))))))))).))))))))....)))...... ( -33.90) >DroSim_CAF1 5268 102 + 1 GAGCUGGGAGUUGCGGAUUGGGAGCCCAACAACAACCUGAAUCGGCGAGGCAACCUCUGCCGAGUCCCGCGACUCGCUGGCUGCCUCGUAAAACUGUCACUU .(((..((((((((((.((((....)))).........((.(((((((((...)))).))))).))))))))))).)..))).................... ( -42.70) >DroYak_CAF1 5640 102 + 1 GAGCUGGGAGUUGCGGAUUGGGAACCCAACAACAACCUGAAACGGCGAGGCAACCUCAGCCGAGUCCCGCGACUCGCUGGCUGCCUCGUAAAACUGUCACUU .(((..((((((((((.((((....)))).........((..((((((((...)))).))))..))))))))))).)..))).................... ( -41.10) >consensus GAGCUGGGAGUUGCGGAUUGGGAGCCCAACAACAACCUGAAUCGGCGAGGCAACCUCAGCCGAGUCCCGCGACUCGCUGGCUGCCUCGUAAAACUGUCACUU .......((((.((((.((((....))))...............((((((((.((...((.(((((....))))))).)).))))))))....)))).)))) (-33.00 = -34.33 + 1.33)
Location | 4,223,579 – 4,223,670 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 90.20 |
Mean single sequence MFE | -40.07 |
Consensus MFE | -36.40 |
Energy contribution | -36.73 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 0.91 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.700942 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4223579 91 - 22407834 AAGUGACAGUUUUACGAGGCAGCCAGCGAGUCGCGGGACUCGGCUGAGGUUGCCUCGCCGAUUCUGGUUGUUGUUGGGCUCCCAAUCCGCA----------- ..(((.(((..((.((((((((((((((((((....))))).)))..))))))))))..))..)))......(((((....))))).))).----------- ( -40.20) >DroSim_CAF1 5268 102 - 1 AAGUGACAGUUUUACGAGGCAGCCAGCGAGUCGCGGGACUCGGCAGAGGUUGCCUCGCCGAUUCAGGUUGUUGUUGGGCUCCCAAUCCGCAACUCCCAGCUC .......((((...((((((((((.(((((((....))))).))...))))))))))........((((((.(((((....)))))..))))))...)))). ( -38.80) >DroYak_CAF1 5640 102 - 1 AAGUGACAGUUUUACGAGGCAGCCAGCGAGUCGCGGGACUCGGCUGAGGUUGCCUCGCCGUUUCAGGUUGUUGUUGGGUUCCCAAUCCGCAACUCCCAGCUC ..............((((((((((((((((((....))))).)))..))))))))))..(((...((((((.(((((....)))))..))))))...))).. ( -41.20) >consensus AAGUGACAGUUUUACGAGGCAGCCAGCGAGUCGCGGGACUCGGCUGAGGUUGCCUCGCCGAUUCAGGUUGUUGUUGGGCUCCCAAUCCGCAACUCCCAGCUC ..(((((((.....((((((((((((((((((....))))).)))..))))))))))((......)))))).(((((....))))).)))............ (-36.40 = -36.73 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:36 2006