Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,222,964 – 4,223,059 |
Length | 95 |
Max. P | 0.773678 |
Location | 4,222,964 – 4,223,059 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 68.06 |
Mean single sequence MFE | -25.90 |
Consensus MFE | -18.51 |
Energy contribution | -18.97 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.15 |
Mean z-score | -1.01 |
Structure conservation index | 0.71 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773678 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4222964 95 - 22407834 CGC-------------------------CUAUUAUAUCACUUAUUCAGUUUCAUCACGCUUAUUUUCCUCAGUGUAUGGGUUUAGGGCACGCAUUGAGGAGUGAGAUCGAUGUGAAGAUG ...-------------------------........((((....((.(((((((...........(((((((((..((.........))..)))))))))))))))).)).))))..... ( -24.00) >DroSim_CAF1 4662 89 - 1 -------------------------------UCAGAGUUCGUUUUCAGUUUCGACACCCUUAUUUUCCUCAGUGUAUGGGUUUAGGGCACGCAUUGAGGAGUGAGAUCGAAGUGGAGAUG -------------------------------........((((((((.((((((....(((((..(((((((((..((.........))..)))))))))))))).)))))))))))))) ( -28.80) >DroYak_CAF1 4886 120 - 1 CCCUUUAAAAAUGAAGUAGAGUUAUUAACUAAUAUUUGACUUGUUUAUUUUCGACACCCUUAUUUUGUUCAGUGCAUAUGUUUAGGGCACGCAUUGAGGAGUGAGAUCGAAGUGGAGAUG ((((((.((((((((...((((((............)))))).))))))))...((((((((...(((...((((.((....))..))))))).))))).))).....)))).))..... ( -24.90) >consensus C_C_________________________CUAUUAUAUCACUUAUUCAGUUUCGACACCCUUAUUUUCCUCAGUGUAUGGGUUUAGGGCACGCAUUGAGGAGUGAGAUCGAAGUGGAGAUG ...........................................((((.((((((....(((((..((((((((((....((.....))..))))))))))))))).)))))))))).... (-18.51 = -18.97 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:34 2006