Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,221,452 – 4,221,545 |
Length | 93 |
Max. P | 0.939685 |
Location | 4,221,452 – 4,221,545 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 75.41 |
Mean single sequence MFE | -24.98 |
Consensus MFE | -15.74 |
Energy contribution | -16.62 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.12 |
Mean z-score | -1.95 |
Structure conservation index | 0.63 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939685 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4221452 93 + 22407834 UAUAUAUG---GCUUGUAGCUGCAG----------CAGCAACGUUGUUGGAAUUUUUCACUUAUAAAAAUUUGCAACGGCGACACACACACACAC-------------AUAUAGCCACA ......((---((((((.((((...----------))))..((((((((((((((((.......)))))))).))))))))............))-------------)...))))).. ( -23.30) >DroPse_CAF1 10141 109 + 1 UA--UAUG---GCUUGUUGCAGCAGUGGCUGCUCGCUGCAACGUUGUUGGAAUUUUUCACUUAUAAAAAUUUGCAACGGCGACACACAGAUGUACAUGCUCAC-----ACACAGGCGCA ..--....---(((((((((((((((....))).)))))).((((((((((((((((.......)))))))).))))))))......................-----..))))))... ( -31.30) >DroSim_CAF1 3142 102 + 1 UAUAUAUG---GCUUGUAGCUGCAG----------CAGCAACGUUGUUGGAAUUUUUCACUUAUAAAAAUUUGCAACGGCGACACACACACACACA----CACAAUAUAUAUAGCCACA ......((---(((((((((((...----------))))..((((((((((((((((.......)))))))).))))))))...............----.......)))).))))).. ( -24.10) >DroWil_CAF1 2695 93 + 1 UUUUUUUGCUUGCUUGUUGC---A-----------CUGCAACGUUGUUGGAAUUUUUCACUUAUAAAAUUUUGCCAAAGCAACACACACUCUCACA----CAC-----ACAUAGGC--- .......(((((...(((((---.-----------..)))))((((((((((((((........))))))...)))..))))).............----...-----...)))))--- ( -14.90) >DroPer_CAF1 10296 109 + 1 UA--UAUG---GCUUGUUGCAGCAGUGGCUGCUCGCUGCAACGUUGUUGGAAUUUUUCACUUAUAAAAAUUUGCAACGGCGACACACAGAUGUACAUGCUCAC-----ACACAGGCGCA ..--....---(((((((((((((((....))).)))))).((((((((((((((((.......)))))))).))))))))......................-----..))))))... ( -31.30) >consensus UAU_UAUG___GCUUGUUGCAGCAG__________CUGCAACGUUGUUGGAAUUUUUCACUUAUAAAAAUUUGCAACGGCGACACACACACACACA____CAC_____ACAUAGGCACA ...........((((((.((((.............))))..((((((((((((((((.......)))))))).)))))))).............................))))))... (-15.74 = -16.62 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:33 2006