Locus 1564

Sequence ID 2L_DroMel_CAF1
Location 4,218,550 – 4,218,654
Length 104
Max. P 0.829540
window2519

overview

Window 9

Location 4,218,550 – 4,218,654
Length 104
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 94.55
Mean single sequence MFE -34.07
Consensus MFE -32.94
Energy contribution -32.50
Covariance contribution -0.44
Combinations/Pair 1.03
Mean z-score -1.81
Structure conservation index 0.97
SVM decision value 0.71
SVM RNA-class probability 0.829540
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4218550 104 + 22407834
AGCUGCGUUCCAGCGUCAAGUUGAUUGAAAUCCAGAGACUCAGACCCCAACUGAGGCUGCUGGUCCUAGGCUUUUAGAAAAAUCUAAUCAAGAUUUAGGCGGCG
.(((((...(((((.((((.....)))).......((.(((((.......))))).)))))))..(((((((((((((....)))))..))).)))))))))). ( -31.00)
>DroSim_CAF1 263 104 + 1
AGCUGCGGCCCAGCGUCAAGUUGAUUGAAAUCCACAGACCCAGACCCCAACUGGGGCUGCUGGUCCUAGGCUUUUAGAAAAAUCUAAUCAAGAUUUAGGCGGCG
.(((((((((((((.....)))).............(((((((.((((....)))))))..))))...)))).......((((((.....))))))..))))). ( -36.40)
>DroYak_CAF1 416 104 + 1
AGCUGCGAUCCAGCGUCAAGUUGAUUGAAAUCCCGAGACCCAGACUCCAGCUGGGGCUGCUGGUCCUAGGCUUUUAGAAAAAUCUAAUCAAGAUUUAGGCGGCG
.(((((((.(((((.((((.....)))).......((.(((((.(....)))))).)))))))))(((((((((((((....)))))..))).)))))))))). ( -34.80)
>consensus
AGCUGCGAUCCAGCGUCAAGUUGAUUGAAAUCCAGAGACCCAGACCCCAACUGGGGCUGCUGGUCCUAGGCUUUUAGAAAAAUCUAAUCAAGAUUUAGGCGGCG
.(((((...(((((.((((.....)))).......((.(((((.......))))).)))))))..(((((((((((((....)))))..))).)))))))))). (-32.94 = -32.50 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:32 2006