Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,209,022 – 4,209,113 |
Length | 91 |
Max. P | 0.664462 |
Location | 4,209,022 – 4,209,113 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 79.14 |
Mean single sequence MFE | -18.95 |
Consensus MFE | -13.17 |
Energy contribution | -13.12 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.27 |
Mean z-score | -1.29 |
Structure conservation index | 0.69 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664462 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4209022 91 - 22407834 UACUUAC-----------UUCAUUCUAUUCAUUAGGUUCAGCACUAUAUCCUGAUUGUUCAGGCGCAGGAUAAUGGCCAACCCAGCUUGUCCACCACCAUAA .......-----------................(((............(((((....)))))....(((((((((.....)))..)))))))))....... ( -16.20) >DroSec_CAF1 9994 91 - 1 CACUUAC-----------UUAAUUCUAUUUAUUAGGUUCAGCAUUACAUCCUGAUAGUUCAGGCCCAGGAUAAUGGCCAACCCAGCCUGUCCACCACCAUAA .....((-----------(((((.......)))))))............(((((....)))))....(((((..(((.......)))))))).......... ( -17.30) >DroSim_CAF1 9152 91 - 1 UACUUAC-----------UUCAUUUAAUUCAUUAGGUUCAGCAUUACAUCCUGAUAGUUCAGGCCCAGGAUAAUGGCCAACCCAGCCUGUCCACCACCAUAA .......-----------................(((............(((((....)))))....(((((..(((.......)))))))))))....... ( -17.10) >DroEre_CAF1 16652 96 - 1 UACUUAGAC------UUGCUUGUUCUACUCAACAGGUUCAGCACUACAUCCUGAUUGUUCAGGCCCAGGAUAAUGGCCAACCCAGCCUGUCCACCACCAUAA ......(..------..(((((((......)))))))....).......(((((....)))))....(((((..(((.......)))))))).......... ( -20.20) >DroYak_CAF1 9197 102 - 1 UACUUAGGCAUAUUUUUGUUUGUUCUAAUCAUCAGGUUCAGCACUACAUCCUGAUUGUGCAGGCCCAGGACAAUGGCCAACCCAGCCUGUCCACCACCAUAA ......((.........((((((....((.((((((.............)))))).))))))))...(((((..(((.......)))))))).))....... ( -21.72) >DroPer_CAF1 18590 93 - 1 CAUUGGU--UU-------UUUUUUGGGUCCCACAGGUACAGCACUACAUUCUGAUUGUACAAGCUCAGGAUAGUGGACAGCCUAGCCUAUCGACCACCAUCA ...((((--..-------.......((((....((((...((.(((((((((((..((....))))))))).))))...))...))))...))))))))... ( -21.20) >consensus UACUUAC___________UUUAUUCUAUUCAUCAGGUUCAGCACUACAUCCUGAUUGUUCAGGCCCAGGAUAAUGGCCAACCCAGCCUGUCCACCACCAUAA ..................................(((............((((......))))....(((((..(((.......)))))))))))....... (-13.17 = -13.12 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:31 2006