Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,198,077 – 4,198,197 |
Length | 120 |
Max. P | 0.828166 |
Location | 4,198,077 – 4,198,197 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.67 |
Mean single sequence MFE | -21.20 |
Consensus MFE | -12.26 |
Energy contribution | -12.50 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.20 |
Mean z-score | -2.15 |
Structure conservation index | 0.58 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828166 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4198077 120 - 22407834 AGUUUAUCAAUGUUUCCGACACAGCAACCGCACAUAAAUCCUUAUUUUCAAAGUAUAAGCUUAAAAAGCUAAAUAUGGCGAUAAAAGCGCCAACUUAGCAGCUUCGGCCAACCCAUAACA .(((......((...((((...(((.........................((((....)))).....(((((...(((((.......)))))..))))).))))))).))......))). ( -21.10) >DroSec_CAF1 11641 120 - 1 AGUUUAUCAAUAUUUCCGACACAAUAACAACACAUAAAACCCCAUAUUCAAAGUAUUAGCUUAAAAAGCUAAAUAUGGCGAUAAAAGCGCCAACCUCACAGCUUUGGCCAACCCACAACA ...............................................(((((((.((((((.....))))))...(((((.......)))))........)))))))............. ( -18.40) >DroSim_CAF1 12595 118 - 1 AGCUUAUCAAUAUUUCCGACACAAUUUCAACACAUAAAUCUCCAUUUUCAAAGUAUUAGCUUAAAAAGCUA-AUAUGGCGAUAAAAGCGCCAACAUCACAGCUUUGGCCAAC-CACAACA ...............................................((((((((((((((.....)))))-)).(((((.......)))))........))))))).....-....... ( -19.30) >DroEre_CAF1 12311 120 - 1 AGCUUAUCAAAUUUUCCGACCAAACGAAAAUACGUAAAUCCCGAUUUUCUCCGUAUUGCCUUAAAAAGCUAAAUCUGGCGAUAAAAUCGCCAACUUCGCAACUUUGGACAACCCACAACA ..............(((((.....((((((((((.((((....))))....))))))..................(((((((...)))))))..)))).....)))))............ ( -19.40) >DroYak_CAF1 12954 118 - 1 AGCUUAUAACAUUUUCCGAC-AAAUGAAAACACUUAAAUCGUGACUUUCGCUGUGUUGGUCUA-AAAGCUAAAUAUGGCGUUAAAAGCGCCAACUGCGCAGCCUUGGCCAACCCACAACA .((((.((((.....(((((-(..(((((.(((.......)))..)))))...))))))....-...((((....)))))))).))))(((((..((...)).)))))............ ( -27.80) >consensus AGCUUAUCAAUAUUUCCGACACAAUAACAACACAUAAAUCCCCAUUUUCAAAGUAUUAGCUUAAAAAGCUAAAUAUGGCGAUAAAAGCGCCAACUUCGCAGCUUUGGCCAACCCACAACA ...............((((....................................((((((.....))))))...(((((.......)))))...........))))............. (-12.26 = -12.50 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:30 2006