| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,197,158 – 4,197,259 |
| Length | 101 |
| Max. P | 0.977069 |
| Location | 4,197,158 – 4,197,259 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.05 |
| Mean single sequence MFE | -21.74 |
| Consensus MFE | -6.06 |
| Energy contribution | -6.34 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.28 |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.977069 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4197158 101 + 22407834 ACUAAUACGC-AAAUUAGCGAAGGU-UUAGAAAUGCUAAUGAAAAACGAGCUAAUUAGCAUACGAAAAUCAAACCAGAU---UUUU--------GUCUAUAGCUA----CG--UUAUCAA ..........-....(((((.((.(-.((((.((((((((.............)))))))).((((((((......)))---))))--------))))).).)).----))--))).... ( -22.52) >DroSec_CAF1 10728 101 + 1 ACUAAAACGC-AAAUUAGCGAAGGU-UUAGAAAUGCUAAUGAAAAACGAGCUAAUUAGCAUACGAAAAUCAAACCCGAU---UUUU--------GUCUAAAGCUA----CG--UUAUCAA ..........-....(((((.((.(-(((((.((((((((.............)))))))).((((((((......)))---))))--------))))))).)).----))--))).... ( -25.82) >DroEre_CAF1 11379 104 + 1 ACUAAAACGC-AA-UCAGCGAGGGU-UUAGAAAUGCUAAUGAAAAACGGGCUAAUUAGCAUAUGAAAACGAAACCCGAU---UUUU--------GUCUAUAGCUAUGUACG--UUAUCAA .....((((.-..-..(((..((((-((....((((((((.............)))))))).........))))))(((---....--------)))....))).....))--))..... ( -19.64) >DroYak_CAF1 12031 106 + 1 ACUAAAACGC-AAAUAGGCGAAGAUUUUUGAAAUGCUAAUGAACAACGAGCUAAUUAGCAUACGAAAAUGAAACCCGAU---UUUU--------GUCUAUAGCUAUGUGCG--UUAUCAA .....(((((-(.(((((((((((((((((..((((((((.............)))))))).))))..........)))---))))--------)))))).......))))--))..... ( -23.42) >DroPer_CAF1 33331 115 + 1 AAUAAAACACCAAAUCAGUGAAACA-UUGGAAACGAUUAUGAAAUACA----AAUUAGCAUACGAGAAGCGAAAGAGGCGGCAAGCGGCCAAAGAAAUAUAGAUAGACGCGUCUUAUCAA .......(((.......)))....(-(((....))))...........----...........((((.(((.....(((.(....).)))..(....).........))).))))..... ( -17.30) >consensus ACUAAAACGC_AAAUCAGCGAAGGU_UUAGAAAUGCUAAUGAAAAACGAGCUAAUUAGCAUACGAAAAUCAAACCCGAU___UUUU________GUCUAUAGCUA____CG__UUAUCAA .......(((.......)))............((((((((.............))))))))........................................................... ( -6.06 = -6.34 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:29 2006