Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,188,861 – 4,188,981 |
Length | 120 |
Max. P | 0.863388 |
Location | 4,188,861 – 4,188,981 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.17 |
Mean single sequence MFE | -38.52 |
Consensus MFE | -28.42 |
Energy contribution | -29.26 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.27 |
Mean z-score | -2.12 |
Structure conservation index | 0.74 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863388 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4188861 120 + 22407834 GAGCGAAUCGGCUCUAGACUCUUCUACAUAAAUCACAAGGAUGCCUACGACUGGCAAUCCGCUGUAGACUUCUGUCGUGACAUGGGUGGCUAUAUAGCCGCCAUCAAGGAUCAAGAGGAG ((((......))))....(((((((.(((...((((..(((((((.......))).))))......(((....))))))).)))(((((((....)))))))...........))))))) ( -43.70) >DroSec_CAF1 2446 120 + 1 GAGCGAAUCGGCUCUAGACUCUUCUACAUAAACCACAAAGAUGCCUUCAACUGGCAAUCCGCUGUAGACUUCUGUCGUGGCAUGGGUGGCUAUAUAGCCGCCAUCAAGGAUCAAGAGGAG ((((......))))....(((((((................((((.......))))((((((..(.(((....))))..))...(((((((....))))))).....))))..))))))) ( -42.60) >DroSim_CAF1 3288 120 + 1 GAGCGAAUCGGCUCCAGACUCUUCUACAUAAACCAUAAAGAUGCCUUCAACUGGCAAUCCGCUGUAGACUUCUGUCGUGGCAUGGGUGGCUAUAUAGCCGCCAUCAAGGAUCAAGAGGAG ((((......))))....(((((((................((((.......))))((((((..(.(((....))))..))...(((((((....))))))).....))))..))))))) ( -42.20) >DroEre_CAF1 2756 120 + 1 GAGCGAAUCGGCUCUAGACUUUUCUACAUCAAUCGCAAGGAUGCAUACGAUUGGAAUUCCGCCGUACAAUACUGCCGCGACAUGGGUGGCUAUAUAGCCACCAUCAAAGAUCAAAUGGAG ((((......))))........((((((((...(....))))).....((((.((....(((.(((......))).))).....(((((((....))))))).))...))))...)))). ( -32.00) >DroYak_CAF1 3315 120 + 1 GAGCGAAUCGGCACUAGAUUGUUCUACAUCAAUAACAACGAUGCACACGAUUGGAAUUCCGCCGUAGAGUACUGCCGCAAAAAGGGUGGCUAUAUAGCCGCCAUCAAAGAUAAAGAGGAG (((((....(((....((((((....((((.........))))...))))))((....)))))((((....)))))))......(((((((....))))))).))............... ( -32.10) >consensus GAGCGAAUCGGCUCUAGACUCUUCUACAUAAAUCACAAAGAUGCCUACGACUGGCAAUCCGCUGUAGACUUCUGUCGUGACAUGGGUGGCUAUAUAGCCGCCAUCAAGGAUCAAGAGGAG ((((......))))....(((((((.......((((..(((...(((((..(((....))).)))))...)))...))))....(((((((....)))))))...........))))))) (-28.42 = -29.26 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:28 2006