Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 449,116 – 449,223 |
Length | 107 |
Max. P | 0.577086 |
Location | 449,116 – 449,223 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 82.49 |
Mean single sequence MFE | -20.87 |
Consensus MFE | -15.32 |
Energy contribution | -15.10 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.36 |
Mean z-score | -1.48 |
Structure conservation index | 0.73 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577086 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 449116 107 - 22407834 CCUAAUCCAUAUUUGAAAUGUCUUUCAUUUAAGUGCCAUACUUUCCAUUUCAGUUGGCCAUUAAUUUGUCCAGUUACGGAAUCAUAUUCGGCUAUUCCAUGAUAGCU .....(((....((((((((..........(((((...)))))..))))))))((((.((......)).))))....))).........(((((((....))))))) ( -17.60) >DroSec_CAF1 10928 107 - 1 CCCAAUCCAUACUUGAAAUGUCAUUUAUUUAAGCGCCAUGCUUUUCAUUUCAGUUGGCCAUUAAUUUGUCCAGUUACGGAAUCAUAUUCGGCUAUUCCCUGAUAGCU .....(((....((((((((..........((((.....))))..))))))))((((.((......)).))))....))).........(((((((....))))))) ( -20.10) >DroSim_CAF1 11139 107 - 1 CCCAAUCCAUACUUGAAAUGUCAUUAAUUUAAGCGCCAUGCUUUUCAUUUCAGUUGGCCAUUAAUUUGUCCAGUUACGGAAUCAUAUUCGGCUAUUCCCUGAUAGCU .....(((....((((((((..........((((.....))))..))))))))((((.((......)).))))....))).........(((((((....))))))) ( -20.10) >DroEre_CAF1 10876 107 - 1 CCUAAUCCAUACUUGAAAUGUCAUUCACUUAAGCACCUUGCUUUUCCUUUCAGUUGGCCAUUAAUUUGUCCAGCUACGGAAUCAUAUUCGGCUCUUGCCUGAUAGCU .....(((.....((((......))))...((((.....))))........((((((.((......)).))))))..)))....((((.(((....))).))))... ( -21.00) >DroYak_CAF1 11094 107 - 1 CCUAGUCCACACGUGAAAUGACUUUCAUUUGAGCGCCUUGCUUUUUAUUUCAGUUGGCCAUUAAUUUGUCCAGCUACGGAAUCAUAUUCGGCUAUUCCCUGAUAGCU .....(((......(((((((.........((((.....)))).)))))))((((((.((......)).))))))..))).........(((((((....))))))) ( -23.00) >DroPer_CAF1 25912 103 - 1 UCUCAGCCACCC--AAUAGAUCACUCUGUUAAA--CUUUGAUUUCUCUUUCAGUUGGCCAUUAAUCUGUCAUCCUAUGGCAUCAUCUUUGGCUAUUCCCUGGUGGGC ......(((((.--((((((....))))))...--..((((........)))).((((((......((((((...)))))).......))))))......))))).. ( -23.42) >consensus CCUAAUCCAUACUUGAAAUGUCAUUCAUUUAAGCGCCAUGCUUUUCAUUUCAGUUGGCCAUUAAUUUGUCCAGCUACGGAAUCAUAUUCGGCUAUUCCCUGAUAGCU .....(((......((((((..........((((.....))))..))))))((((((.((......)).))))))..))).........(((((((....))))))) (-15.32 = -15.10 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:37 2006