| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,186,027 – 4,186,117 |
| Length | 90 |
| Max. P | 0.829231 |
| Location | 4,186,027 – 4,186,117 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 92.22 |
| Mean single sequence MFE | -22.17 |
| Consensus MFE | -21.10 |
| Energy contribution | -21.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.829231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4186027 90 - 22407834 CGUAUGUACAUAUGUAUCUGUUCUUGUUUAUGUCGUGGCUAAUUUGACAUGUCCAAUUCGGAUGUGGCAUAAUCAGUGGUUGGCCAAAAU (((((....)))))((((((...(((..(((((((.........)))))))..)))..))))))((((.((((.....)))))))).... ( -22.50) >DroSim_CAF1 457 90 - 1 CAUAUGUACAUAUGUAUCUGUUCUUGUUUAUGUCGUGGCUAAUUUGACAUGUCCAAUUCGGAUGUGGCAUAAUCAGUGGUUGGCCAAAAU (((((....)))))((((((...(((..(((((((.........)))))))..)))..))))))((((.((((.....)))))))).... ( -22.90) >DroYak_CAF1 479 82 - 1 --------CAUAUGUAUCUGUUCUUGUUUAUGUCGUUCCUAAUUUGACAUGUCCAAUUCGGAUGUGGCAUAAUCAGUGGUUGGCCAAAAU --------......((((((...(((..(((((((.........)))))))..)))..))))))((((.((((.....)))))))).... ( -21.10) >consensus C_UAUGUACAUAUGUAUCUGUUCUUGUUUAUGUCGUGGCUAAUUUGACAUGUCCAAUUCGGAUGUGGCAUAAUCAGUGGUUGGCCAAAAU ..............((((((...(((..(((((((.........)))))))..)))..))))))((((.((((.....)))))))).... (-21.10 = -21.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:25 2006