Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,178,978 – 4,179,083 |
Length | 105 |
Max. P | 0.600115 |
Location | 4,178,978 – 4,179,083 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 93.88 |
Mean single sequence MFE | -27.17 |
Consensus MFE | -21.82 |
Energy contribution | -21.57 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.12 |
Mean z-score | -2.29 |
Structure conservation index | 0.80 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.600115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4178978 105 + 22407834 A----AGAUAGCGA--AG------GAGACAGUGGCAAAAAGAUGGCCAUCUUUAUGCUGGGCCAAAAACUGACAGAAAUAAAGUGAAGUUGGUCAUAAAUUUGCUUUUACGCCAAGA .----.....(((.--.(------....)...((((((...(((((((.((((((.(((.............))).......)))))).)))))))...))))))....)))..... ( -26.72) >DroSec_CAF1 13541 105 + 1 A----AGAUAGCGA--AG------GAGACAGUGGCAAAAAGAUGGCCAUCUUUAUGCUGGGCCAAAAACUGACAGAAAUAAAGUGAAGUUGGUCAUAAAUUUGCUUUCACGCCAAGA .----.((.(((((--((------....)...((((.((((((....)))))).)))).((((((..(((...(....)..)))....)))))).....)))))).))......... ( -27.50) >DroSim_CAF1 14032 105 + 1 A----AGAUAGCGA--AG------GAGACAGUGGCAAAAAGAUGGCCAUCUUUAUGCUGGGCCAAAAACUGACAGAAAUAAAGUGAAGUUGGUCAUAAAUUUGCUUUUACGCCAAGA .----.....(((.--.(------....)...((((((...(((((((.((((((.(((.............))).......)))))).)))))))...))))))....)))..... ( -26.72) >DroEre_CAF1 14156 105 + 1 A----AGAUAGCGA--AG------GAGACAGUGGCAAAAAGAUGGCCAUCUUUAUGCUGGGCCAAAAACUGACAGAAAUAAAGUGAAGUUGGUCAUAAAUUUGCUUUUACGCCAAGA .----.....(((.--.(------....)...((((((...(((((((.((((((.(((.............))).......)))))).)))))))...))))))....)))..... ( -26.72) >DroYak_CAF1 14114 105 + 1 A----AGAUAGCGA--AG------GAGACAGUGGUAAAAAGAUGGCCAUCUUUAUGCUGGGCCAAAAACUGACAGAAAUAAAGUGAAGUUGGUCAUAAAUUUGCUUUUACGCCAAGA .----.....(((.--.(------....)...((((((...(((((((.((((((.(((.............))).......)))))).)))))))...))))))....)))..... ( -24.72) >DroAna_CAF1 16831 117 + 1 UGGGUAGAUAGCCGGGAAGAGACUGUGACUGUGGCAAAAAGAUGGCCAUCUUUAUGCUGGGCCAAAAACUGACAGAAAUAAAGUGAAGUUGGUCAUAAAUUUGCUUUUACGCCAAGA (((((((((((((((.......))).).))))((((((...(((((((.((((((.(((.............))).......)))))).)))))))...)))))).)))).)))... ( -30.62) >consensus A____AGAUAGCGA__AG______GAGACAGUGGCAAAAAGAUGGCCAUCUUUAUGCUGGGCCAAAAACUGACAGAAAUAAAGUGAAGUUGGUCAUAAAUUUGCUUUUACGCCAAGA ......((.(((((..................((((.((((((....)))))).)))).((((((..(((...........)))....))))))......))))).))......... (-21.82 = -21.57 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:24 2006