| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,178,485 – 4,178,585 |
| Length | 100 |
| Max. P | 0.828480 |
| Location | 4,178,485 – 4,178,585 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 75.80 |
| Mean single sequence MFE | -30.90 |
| Consensus MFE | -14.32 |
| Energy contribution | -13.63 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.828480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4178485 100 + 22407834 CAGCG---UAUCCGGUUUUUAUGUGCUUAUACGGCAUAAUUGUGGCCCCAUAAUUGGCCCGACAAUUGCGCCG---AAUGCCAA----CAUAAAUGCAAAUGGCUCGCUG (((((---...((.((.(((((((...(((.((((.(((((((((((........))))..))))))).))))---.)))...)----)))))).))....))..))))) ( -35.60) >DroVir_CAF1 19656 91 + 1 UACCC---UAUACGC-UUUUAUGUGCUCAUAUGACUUAAUUGCGGCA-CGUAAUUGGCCUGACAAUUGCUGCA---AGUGC--------UUCAA---AAAUGCCUCGCUG .....---....(((-..(((.((.(......))).)))..)))(((-.(((((((......)))))))))).---((((.--------..((.---...))...)))). ( -18.30) >DroEre_CAF1 13605 104 + 1 CAGCG---UAUCCGGUUUUUAUGUGCUUAUACGGCGUAAUUGUGGCCGCGUAAUUGGCCCGACAAUUGCGUCG---AAUGCCAACGUACAUAAAUGGAAAUGCCUCGCUG ..(((---(.((((...(((((((((.(((.(((((((((((((((((......)))))..))))))))))))---.))).....))))))))))))).))))....... ( -39.10) >DroYak_CAF1 13559 100 + 1 CAGCG---UAUCCGGUUUUUAUGUGCUUAUACGGCGUAAUUGUGGCCCUGUAAUUGGCCCGACAAUUGCGCUG---AAUGCCAA----CAUAAAUGGAAAUGCCUCGCUG ..(((---(.((((...(((((((...(((.((((((((((((((((........))))..))))))))))))---.)))...)----)))))))))).))))....... ( -37.50) >DroMoj_CAF1 20157 97 + 1 CAGCUGGGCAUCCUC-UUUUAUGUGCUCAUAUGACAUAAUUGCGGCA-CGUAAUUGGCCUGACAAUUGCUGCAAGAAGUGC--------UUCAA---AAAUGCCUCGCUG ((((.((((((....-..((((((.(......)))))))(((.((((-((((((((......)))))))........))))--------).)))---..)))))).)))) ( -30.00) >DroAna_CAF1 15932 88 + 1 CGGCG---UAUCCGGUUUUUAUGUCCUCAUACGGCAUAAUUGCGGCACGGUAAUUGGCCUGACAAUUGCGCUG---AA----------------UGGGAAUGCUUCGCUG .((((---(.(((.(((.(((((((.......)))))))...((((...(((((((......)))))))))))---))----------------).))))))))...... ( -24.90) >consensus CAGCG___UAUCCGGUUUUUAUGUGCUCAUACGGCAUAAUUGCGGCACCGUAAUUGGCCCGACAAUUGCGCCG___AAUGC________AUAAAUGGAAAUGCCUCGCUG ((((...............((((....))))((((.((((((((((..........))).).)))))).)))).................................)))) (-14.32 = -13.63 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:23 2006