Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,176,220 – 4,176,328 |
Length | 108 |
Max. P | 0.808192 |
Location | 4,176,220 – 4,176,328 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.46 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -20.08 |
Energy contribution | -20.14 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.09 |
Mean z-score | -2.00 |
Structure conservation index | 0.84 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808192 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4176220 108 - 22407834 ACACACACACUUUACAU------AUUCAGCGUUUCAUCUACAUUCUGUGUGCCAUUUUCUAUUGCAGUUUUUUGCAGCAUUUGCUGCUUCUGACACGACACAGAUACG---CAGGAC--- .................------.(((.((((...........(((((((((.((.....)).)).(((....(((((....)))))....)))...))))))).)))---).))).--- ( -24.70) >DroSec_CAF1 10776 108 - 1 ACACACACACUUUACAU------AUUCAGCGUUUCAUAUACAUUCUGUGUGCCAUUUUCAAUUGCAGUUUUUUGCAGCAUUUGCUGCUUCUGACACGACACAGAUACG---CAGGAC--- .................------.(((.((((...........(((((((((.((.....)).)).(((....(((((....)))))....)))...))))))).)))---).))).--- ( -24.20) >DroSim_CAF1 11253 108 - 1 ACACACACACUUUACAU------AUUCAGCGUUUCAUCUACAUUCUGUGUGCCAUUUUCAAUUGCAGUUUUUUGCAGCAUUUGCUGCUUCUGACACGACACAGAUACG---CAGGAC--- .................------.(((.((((...........(((((((((.((.....)).)).(((....(((((....)))))....)))...))))))).)))---).))).--- ( -24.20) >DroEre_CAF1 11247 112 - 1 ACA--CACACUUUACAUACUCGUAUUCAGCGUUUCAUCUACAUUCUGUGUGCCAUUUUCAAUUGCAGUUUUUUGCAGCAUUUGCUGCUUCUGACACGACACAGAUACG---CAGGAC--- ...--...................(((.((((...........(((((((((.((.....)).)).(((....(((((....)))))....)))...))))))).)))---).))).--- ( -24.20) >DroYak_CAF1 11168 106 - 1 ACA--CACACUUUACAU------AUUCAGCGUUUCAUCUACAUUCUGUGUGCCAUUUUCAAUUGCAGUUUUUUGCAGCAUUUGCUGCUUCUGACACGACACAGAUACG---CAGGAC--- ...--............------.(((.((((...........(((((((((.((.....)).)).(((....(((((....)))))....)))...))))))).)))---).))).--- ( -24.20) >DroAna_CAF1 13471 108 - 1 A------CACUUUACGU------AUUCAACGUCUCAUCUACAUUCUGUGUGCCUUUUUCAAUUGCAAUUUUUUGCAGCAUUUGCUGCUUUUGACACGACACAGAUACGACACAGGGCACA .------......((((------.....))))...............((((((((..((..............(((((....))))).((((........))))...))...)))))))) ( -21.30) >consensus ACA__CACACUUUACAU______AUUCAGCGUUUCAUCUACAUUCUGUGUGCCAUUUUCAAUUGCAGUUUUUUGCAGCAUUUGCUGCUUCUGACACGACACAGAUACG___CAGGAC___ ..............................((((.........(((((((((.((.....)).)).(((....(((((....)))))....)))...))))))).........))))... (-20.08 = -20.14 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:22 2006