Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,174,421 – 4,174,540 |
Length | 119 |
Max. P | 0.524741 |
Location | 4,174,421 – 4,174,540 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.99 |
Mean single sequence MFE | -38.26 |
Consensus MFE | -33.90 |
Energy contribution | -33.82 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.09 |
Mean z-score | -1.16 |
Structure conservation index | 0.89 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4174421 119 + 22407834 AGAAAUGCUAAGUAGAUCGUCCGUAAGUCGGAUGCCCGGAAUAGGACAGCAGAUAGGGUGUUUUCCACC-AGCAACAGUGGGGAGGCUGUGGGCGUGUCAAAGCUCAUUACUUGUUGUCA .......(((....(..((((((.....))))))..)....)))((((((((....(((.((..((((.-.......))))..)))))((((((........))))))...)))))))). ( -34.70) >DroSec_CAF1 8957 120 + 1 AGAAAUGCUAAGUAGAUCGUCCGUAAGUCGGAUGCCCGGAAUAGGACAGCAGAUAGCGGGUUUUCCACCCGGCAACAGUGGGGAGGCGGUGGGCGUGUCAAAGCUCAUUACUUGUUGUCA .....((((..(.....)((((.....((((....))))....))))))))((((((((((...((.(((.((....)).))).)).(((((((........))))))))))))))))). ( -42.20) >DroSim_CAF1 9426 120 + 1 AGAAAUGCUAAGUAGAUCGUCCGUAAGUCGGAUGCCCGGAAUAGGACAGCAGAUAGGGGGUUUUCCACCCGGCAACAGUGGGGAGGCGGUGGGCGUGUCAAAGCUCAUUACUUGUUGUCA .......(((....(..((((((.....))))))..)....)))((((((((......(.((..((((..(....).))))..)).)(((((((........)))))))..)))))))). ( -38.90) >DroEre_CAF1 9468 119 + 1 AGAAAUGCUAAGUAGAUCGUCCGUAAGUAGGAUGCCCAGAAUAGGACAGCAGAUAGGGGGUUCCCCACG-AGCAACAGUGGGGAGGCGGUGGGCGUGUCAAAGCUCAUUACUUGUUGUCA .......(((.......(((((.......))))).......)))((((((((......(.((((((((.-.......)))))))).)(((((((........)))))))..)))))))). ( -40.74) >DroYak_CAF1 9386 119 + 1 AGAAAUGCUAAGUAGAUCGUCCGUAAGUCGGAUGCCCAGAAUAGGACAGCAGAUAGGGGGUUUUCCAAG-AGCAAAAGUGGGAAGGCGGUGGGCGUGUCAAAGCUCAUUACUUGUUGUCA .......(((.......((((((.....)))))).......)))((((((((.......(((((((...-.((....)).)))))))(((((((........)))))))..)))))))). ( -34.74) >consensus AGAAAUGCUAAGUAGAUCGUCCGUAAGUCGGAUGCCCGGAAUAGGACAGCAGAUAGGGGGUUUUCCACC_AGCAACAGUGGGGAGGCGGUGGGCGUGUCAAAGCUCAUUACUUGUUGUCA .......(((....(..((((((.....))))))..)....)))((((((((........((((((((.........))))))))(..((((((........))))))..))))))))). (-33.90 = -33.82 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:21 2006