Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,174,137 – 4,174,251 |
Length | 114 |
Max. P | 0.981073 |
Location | 4,174,137 – 4,174,251 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 93.77 |
Mean single sequence MFE | -31.50 |
Consensus MFE | -26.66 |
Energy contribution | -27.14 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.08 |
Mean z-score | -1.99 |
Structure conservation index | 0.85 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.981073 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4174137 114 + 22407834 AGAAUCGUGAAAGGAAGUGCAAGGCAGCCAGAUAGAGCAGCCUGUGUGGGUGUCAAAAAAUGAGAAAUAGCUUUGGACCGACGGCAAAGCUGCACUGCAAGAAAACAGUCGAAG .((...((.......(((((..((((.(((.((((......)))).))).))))..............(((((((.........))))))))))))........))..)).... ( -31.16) >DroSec_CAF1 8676 114 + 1 GGAAUCGUGGAAGGAAGUGCAAGGCAGCCAGAUAGAGCAGCCUGUGUGGGUGUCAAAAAAUGAGAAAUAGCUUUGGACCGACGGCAAAGCUGCACUGCAAGAAAACAGACGUAG ......((.......(((((..((((.(((.((((......)))).))).))))..............(((((((.........))))))))))))........))........ ( -30.76) >DroSim_CAF1 9141 114 + 1 GGAAUCGUGGAAGGAAGUGCAAGGCAGCCAGAUAGAGCAGCCUGUGUGGGUGUCAAAAAAUGAGAAAUAGCUUUGGACCGACGGCAAAGCUGCACUGCAAGAAAACAUUCGAAG .((((.((.......(((((..((((.(((.((((......)))).))).))))..............(((((((.........))))))))))))........)))))).... ( -33.16) >DroEre_CAF1 9174 114 + 1 AGAACCGUGGAAGGAAGUGCAAGGCAGCCAGAUAGAGCAGCCUGUGUGGGUGUCAAAAAAUGAGAAAUAGCUUUGGACCGACGGUAAGGCUGCACUGCAAGAAAACAGUCGAUU .((.((......))...((((..((((((...((((((.((((....)))).(((.....)))......)))))).(((...)))..))))))..)))).........)).... ( -30.60) >DroYak_CAF1 9099 113 + 1 UGAAACGUGGAGGGAAGCGGAA-GCAGCCAGAUAGAGCAGCCUGUGUGGGUGUCAAAAAAUGAGAAAUAGCUGUGGACCCACGGCAAAGCUGCACUGCAAGAAAACAGUCGAAG ......(..(..((..((....-))..)).......(((((.(((((((((.(((.......(....).....))))))))).)))..))))).)..)................ ( -31.80) >consensus AGAAUCGUGGAAGGAAGUGCAAGGCAGCCAGAUAGAGCAGCCUGUGUGGGUGUCAAAAAAUGAGAAAUAGCUUUGGACCGACGGCAAAGCUGCACUGCAAGAAAACAGUCGAAG ......((.......(((((..((((.(((.((((......)))).))).))))..............(((((((.........))))))))))))........))........ (-26.66 = -27.14 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:20 2006