Locus 1552

Sequence ID 2L_DroMel_CAF1
Location 4,173,830 – 4,173,933
Length 103
Max. P 0.559507
window2507

overview

Window 7

Location 4,173,830 – 4,173,933
Length 103
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.65
Mean single sequence MFE -33.35
Consensus MFE -22.66
Energy contribution -22.08
Covariance contribution -0.58
Combinations/Pair 1.22
Mean z-score -2.02
Structure conservation index 0.68
SVM decision value 0.05
SVM RNA-class probability 0.559507
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4173830 103 + 22407834
-UGUCAUUGCAAUUGCAAAUAAAUAAGAAAGCCCG-UUGCAA-GGAUCCGAAGGAAUUCAGCAGGAUGGGCGACAAAGUUGCCCAGCAGCAAAAU--------------GUGGGAGGGUU
-.....((((....))))...........(((((.-(..((.-((((.(....).)))).((....((((((((...))))))))...))....)--------------)..)..))))) ( -30.60)
>DroSec_CAF1 8352 117 + 1
-UGUCAUUGCAAUUGCAAAUAAAUAAGAAAGCCCG-UUGCAA-GGAUACGAAGGAAUUCAGCAGGAUGGGCGACAAAGUUGCCCAACAGCAAAAUGUGGCGUUCGAAAUGUGGGUGGGUU
-.....((((....))))...........((((((-(..((.-((((.(....).)))).((..(.((((((((...)))))))).).))....))..))(..((.....))..)))))) ( -33.10)
>DroSim_CAF1 8816 118 + 1
CUGUCAUUGCAAUUGCAAAUAAAUAAGAAAGCCCG-UUGCAA-GGAUACGAAGGAAUUCAGCAGGAUGGGCGACAAAGUUGCCCAACAGCAAAAUGUGGCGUUCGAAAUGUGGGUGGGUU
(..((.((((....))))........(((.(((((-((((..-((((.(....).)))).......((((((((...))))))))...)))..))).))).)))........))..)... ( -33.40)
>DroEre_CAF1 8862 117 + 1
-UGUCAUUGCAAUUGCAAAUAAAUAAGAAAGCCCG-UUGCAA-GGAUACGAAGGAAUUCAGCAGGAUGGGCGACAAAGUUGCCCAGGAGCAAAAUGUGGCGUUCGAAAUGCGGGAGGGUU
-.....((((....))))...........((((((-(..((.-((((.(....).)))).((....((((((((...))))))))...))....))..)).((((.....)))).))))) ( -34.60)
>DroYak_CAF1 8777 117 + 1
-UGUCAUUGCAAUUGCAAAUAAAUAAGAAAGCCCG-UUGCAA-GGAUACGGAGGAAUUCAGCAGGAUGGGUGACAAAGUUGCCCAGGAGCAAAAUGUGGCGUUCGAAAUGCGGGAGGGUU
-.....((((....))))...........((((((-(..((.-((((........)))).((....((((..((...))..))))...))....))..)).((((.....)))).))))) ( -29.90)
>DroAna_CAF1 10643 111 + 1
-UGUCAUUGCAAUUGCAAAUAAAUAAGAAAGCCGGGGCGCACUGAAUCCAGUGGAAUUCUCCAGGAUGGGCGACAAAGUUGCCUCGGGGAUGCAGGGGCCA--------GUCGGCAGUAC
-.....((((....))))............((((.(((.(.(((.((((..((((....))))....(((((((...)))))))...)))).)))).))).--------..))))..... ( -38.50)
>consensus
_UGUCAUUGCAAUUGCAAAUAAAUAAGAAAGCCCG_UUGCAA_GGAUACGAAGGAAUUCAGCAGGAUGGGCGACAAAGUUGCCCAGCAGCAAAAUGUGGCGUUCGAAAUGUGGGAGGGUU
......((((....)))).............((((........((((.(....).)))).((....((((((((...))))))))...))....................))))...... (-22.66 = -22.08 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:19 2006