Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,171,566 – 4,171,663 |
Length | 97 |
Max. P | 0.771395 |
Location | 4,171,566 – 4,171,663 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 90.80 |
Mean single sequence MFE | -26.13 |
Consensus MFE | -23.40 |
Energy contribution | -23.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.90 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.771395 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4171566 97 - 22407834 UUCCUCAUCCA--------UUGUCGUUGUAGGUGUCCUCGGCACAUUAGCGACAUUUACACGUCGCAGCAAUUUCAAACAGCAGCCGACAAGGCUCAUUCCCUAG ........((.--------((((((((((.(((((.....))))....(((((........)))))............).)))).))))))))............ ( -24.90) >DroSec_CAF1 6129 97 - 1 UUCCUCAUCCA--------UUGUCGUUGUAGGUGUCCUCGGCACAUUAGCGACAUUUACACGUCGCAGCAAUUUCAAACAGCAGCCGACAAGGCUCAUUCCCUAG ........((.--------((((((((((.(((((.....))))....(((((........)))))............).)))).))))))))............ ( -24.90) >DroSim_CAF1 6539 97 - 1 UUCCUCAUCCA--------UUGUCGUUGUAGGUGUCCUCGGCACAUUAGCGACAUUUACACGUCGCAGCAAUUUCAAACAGCAGCCGACAAGGCUCAUUCCCUAG ........((.--------((((((((((.(((((.....))))....(((((........)))))............).)))).))))))))............ ( -24.90) >DroEre_CAF1 6579 105 - 1 UUCCUCGUCCACAUUGUCGUUGUCGUUGUAGGUGUCCUCGGCACAUUAGCGACAUUUACACGUCGCAGCAAUUUCAAACAGCAGCCGACAAGGCUCAUUCCCUAG ...............(((.((((((((((.(((((.....))))....(((((........)))))............).)))).)))))))))........... ( -26.30) >DroYak_CAF1 6589 105 - 1 UUCCUCAUCCACAUUGUCGUUGCCGUUGUAGGUGUCCUCGGCACAUUAGCGACAUUUACACGUCGCAGCAAUUUCAAACAGCAGCCGACAAGGCUCAUUCCCUAG .............((((((..((.(((((..((((.....))))....(((((........)))))...........))))).)))))))).............. ( -26.90) >DroAna_CAF1 8351 93 - 1 GCCCACAUCCACA------UUGUCGUUGUCGGUGUCCUCGGCACAUUAGCGACAUUUACACGUCGCAGCAAUUUCAAACAGCAGCCGACAAGGCUGGAU------ ......(((((..------((((((((((.(((((.....))))....(((((........)))))............).)))).))))))...)))))------ ( -28.90) >consensus UUCCUCAUCCA________UUGUCGUUGUAGGUGUCCUCGGCACAUUAGCGACAUUUACACGUCGCAGCAAUUUCAAACAGCAGCCGACAAGGCUCAUUCCCUAG ........................(((((..((((.....))))....(((((........)))))...........)))))((((.....)))).......... (-23.40 = -23.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:17 2006