Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 446,057 – 446,156 |
Length | 99 |
Max. P | 0.647519 |
Location | 446,057 – 446,156 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 78.52 |
Mean single sequence MFE | -34.88 |
Consensus MFE | -20.76 |
Energy contribution | -20.52 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.29 |
Mean z-score | -1.62 |
Structure conservation index | 0.60 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 446057 99 + 22407834 AUUUACCCCAUCCAGGAUCCAGCUGUAAGCCAGCAAGAGUAUCUGGAUGCCAAACAGGGAUCCUUACUGGCGGCAAUGGCCCAAGCAGCACCACCCCCA .......((.....)).....(((((..(((((..((.....))((((.((.....)).))))...)))))(((....)))...))))).......... ( -28.50) >DroVir_CAF1 11184 99 + 1 AUCUAUCCCAUACAGGAUCCGGCUGUCAGCCAGCAGGAGUAUCUGGAUGCCAAGCAGAGCUCGCUGCUGGCGGCCAUGGCACAGGGUCAGCCGCCAACG ....((((......)))).((((((.(.((((((((((((.((((.........)))))))).)))))))).((....)).....).))))))...... ( -41.70) >DroPse_CAF1 22833 99 + 1 AUCUACCCGAUUCAGGAUCCGGCGGUCAGUCAGCAGGAGUACCUGGACUCCAAGCAGGGAUCCCUGCUGGCAGCCAUGGCCCAUCAAGCACCUCCACCA ......((......))....((.((((.(((((((((..(.((((.........)))).)..))))))))).((....)).......).))).)).... ( -32.90) >DroWil_CAF1 8874 99 + 1 AUUUAUCCCAUUCAAGAUCCAGCUGUCAGUCAACAAGAAUAUCUAGAUGCCAAACAGGGUUCCUUGUUGGCGGCCAUGGCGGCUGCUGCCCCACCGCCA ...........((.((((.....(((......))).....)))).)).(((((.((((....)))))))))(((..(((.(((....))))))..))). ( -29.00) >DroMoj_CAF1 10109 96 + 1 AUCUAUCCCAUACAGGAUCCGGCCGUUAGCCAGCAGGAGUAUCUGGAUGCCAAGCAGAGCUCCCUGCUGGCCGCCAUGGCGCAGGC---GCCGGCACCG ..............((..(((((.(((.((((((((((((.((((.........))))))).)))))))))(((....)))..)))---)))))..)). ( -41.40) >DroAna_CAF1 8925 99 + 1 AUCUACCCCAUCCAGGAUCCGGCAGUCAGCCAACAGGAGUAUCUGGACGCCAAGCAGGGUUCCCUACUGGCAGCCAUGGCCCAGGCGGCACCACCGCCG .......(((((((((.((((((.....)))....)))...)))))).((((.(.(((....))).))))).....)))....(((((.....))))). ( -35.80) >consensus AUCUACCCCAUACAGGAUCCGGCUGUCAGCCAGCAGGAGUAUCUGGAUGCCAAGCAGGGAUCCCUGCUGGCGGCCAUGGCCCAGGCAGCACCACCACCA ..............((............(((((((((....((((.........))))....))))))))).((....))..........))....... (-20.76 = -20.52 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:36 2006