Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,171,070 – 4,171,162 |
Length | 92 |
Max. P | 0.960184 |
Location | 4,171,070 – 4,171,162 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 88.84 |
Mean single sequence MFE | -23.35 |
Consensus MFE | -20.68 |
Energy contribution | -20.85 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.16 |
Mean z-score | -2.17 |
Structure conservation index | 0.89 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.960184 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4171070 92 - 22407834 CGAGGGUUAACCAACAACGACAAUGACCACUUGUCGUUGGCAAACAUUUGCCAAAAUGACCGCAUUGACCAAAUAGAGGCGCUGCCAAAGGA ....(((((......((((((((.......))))))))(((((....)))))....)))))(((.((.((.......)))).)))....... ( -24.40) >DroSec_CAF1 5655 92 - 1 AGAGGGUUAACCAACAACGACAAUGACCACUUGUCGUUGGCAAACAUUUGCCAAAGUGACCGCAUUGACCAAAUAGAGGCGCUGCCAAAGGA ....(((((......((((((((.......))))))))(((((....)))))....)))))(((.((.((.......)))).)))....... ( -24.30) >DroSim_CAF1 6057 92 - 1 AGAGGGUUAACCAACAACGACAAUGACCACUUGUCGUUGGCAAACAUUUGCCAAAAUGACCGCAUUGACCAAAUAGAGGCGCUGCCAAAGGA ....(((((......((((((((.......))))))))(((((....)))))....)))))(((.((.((.......)))).)))....... ( -24.40) >DroEre_CAF1 6133 92 - 1 AGAGGGUUAACCAACAACGACAAUGACCACUUGUCGUUGGCAAACAUUUGCCAAAAUGACCGCAUUGACCAAAUAGAGGCGAAGCCAAAGGA ....((((((....(((((((((.......)))))))))((...(((((....)))))...)).)))))).......(((...)))...... ( -24.30) >DroYak_CAF1 6131 92 - 1 AGAGGGUUAACCAACAACGACAAUGACCACUUGUCGUUGGCAAACAUUUGCCAAAAUGACCGCAUUGACCAAAUAGAGGCGCAGCCAAAGGA ....((((((....(((((((((.......)))))))))((...(((((....)))))...)).)))))).......(((...)))...... ( -24.30) >DroAna_CAF1 7869 87 - 1 AGCCAAAUGGCAAACAAUGACAAUGACCACUUGUCGUUGGCAAACAUUUGCCAAAAUGACCGCAACGAGAAAAUGGAAAAAACCCUA----- .(((....)))...(((((((((.......)))))))))((...(((((....)))))...))...........((.......))..----- ( -18.40) >consensus AGAGGGUUAACCAACAACGACAAUGACCACUUGUCGUUGGCAAACAUUUGCCAAAAUGACCGCAUUGACCAAAUAGAGGCGCUGCCAAAGGA ....((((((....(((((((((.......)))))))))((...(((((....)))))...)).)))))).......(((...)))...... (-20.68 = -20.85 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:16 2006