Locus 1547

Sequence ID 2L_DroMel_CAF1
Location 4,167,930 – 4,168,034
Length 104
Max. P 0.809331
window2501

overview

Window 1

Location 4,167,930 – 4,168,034
Length 104
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 77.15
Mean single sequence MFE -16.41
Consensus MFE -10.10
Energy contribution -10.27
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.62
SVM decision value 0.64
SVM RNA-class probability 0.809331
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4167930 104 - 22407834
----UUC-------UCGUUUUUUUUUUCUCU-UUCUA--UCGAGGUGAGAUCCU-CCCGCUCGCACAUUAAACUCAUUGUGUUUAUGGCAUAAAUUUGCAAGUUUUGCACGUAAAUUUU
----..(-------(((..............-.....--.))))(((((.....-....)))))................((((((((((.(((((....)))))))).)))))))... ( -15.25)
>DroVir_CAF1 4051 106 - 1
----UUUCUUUUCUUUUC-UGUUUUUUAUUU-UGUUG--GCCCUG-----UCCUGGCCCCAGGCACAUUAAACUCAUUGUGUUUAUGGCAUAAAUUUGCAUGUUUUCCACGUAAAUUUU
----..............-............-.....--(((.((-----(((((....)))).))).(((((.......))))).)))..((((((((.((.....)).)))))))). ( -18.60)
>DroPse_CAF1 70013 97 - 1
----AUC-------UCCC---UCUUCUCUCUGCUUUG--UGUGUG-----UCCU-CCCACUCGCACAUUAAACUCAUUGUGUUUAUGGCAUAAAUUUGCAUGUUUUUCACGUAAAUUUU
----...-------....---.........((((.((--((((.(-----(...-...)).)))))).(((((.......))))).)))).((((((((.((.....)).)))))))). ( -17.40)
>DroEre_CAF1 3064 87 - 1
----UUC-------UC------------UUU-UUUUA--UCGAGG-----UCCU-CCCGCUCGCACAUUAAACUCAUUGUGUUUAUGGCAUAAAUUUGCAUGUUUUGCACGUAAAUUUU
----.((-------((------------...-.....--..))))-----....-...(((.(((((..........)))))....)))..((((((((.((.....)).)))))))). ( -13.10)
>DroAna_CAF1 3410 102 - 1
UCCAUAC-------UC---UCUUUUUUUUUU-UUUUAUUUGGGGG-----UCCU-CCCGCUCGCACAUUAAACUCAUUGUGUUUAUGGCAUAAAUUUGCAUGUUUUCCACGUAAAUUUU
.(((((.-------..---............-........(.(((-----....-))).)..(((((..........))))).)))))...((((((((.((.....)).)))))))). ( -17.10)
>DroPer_CAF1 69080 97 - 1
----AUC-------UCUC---UCUUCUCUCAGCUUUG--UGUGUG-----UCCU-CCCACUCGCACAUUAAACUCAUUGUGUUUAUGGCAUAAAUUUGCAUGUUUUUCACGUAAAUUUU
----...-------....---..........(((.((--((((.(-----(...-...)).)))))).(((((.......))))).)))..((((((((.((.....)).)))))))). ( -17.00)
>consensus
____UUC_______UC_C___UUUUUUCUCU_UUUUA__UCGGGG_____UCCU_CCCGCUCGCACAUUAAACUCAUUGUGUUUAUGGCAUAAAUUUGCAUGUUUUCCACGUAAAUUUU
..............................................................((.(((.((((.......)))))))))..((((((((.((.....)).)))))))). (-10.10 = -10.27 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:13 2006