| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,167,282 – 4,167,385 |
| Length | 103 |
| Max. P | 0.606595 |
| Location | 4,167,282 – 4,167,385 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.87 |
| Mean single sequence MFE | -30.80 |
| Consensus MFE | -21.56 |
| Energy contribution | -21.92 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.606595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4167282 103 - 22407834 --------------ACCUGGGC--AUGUGUAUAAGUGUCAAAGGCAUGUGUUUAGCAUGCCUCAUUUGAGCGCAAAUACACCUGCAGCCAUCAAUUAUGCAAAGAGCCAGU-UCCGAUGC --------------..((((((--(.((((((..(((((((((((((((.....))))))))...)))).)))..)))))).))).((..........))......)))).-........ ( -33.20) >DroVir_CAF1 3241 100 - 1 ---------------GC-GAGU--GUGUUUAUAAGUGUCAAAGGCAUGUGUUUAGCAUGCCUCAUUUGAGCGCAAAUACACCUGCAGCCAUCAAUUAUGCAAAGAGC-AGC-UACGUCCC ---------------((-(.((--((((((....(((((((((((((((.....))))))))...)))).))))))))))).)))(((.........(((.....))-)))-)....... ( -29.40) >DroPse_CAF1 69261 120 - 1 GUACCAGGACCAGUACCAGGACCCCUGUAUAUAAGUGUCAAAGGCAUGUGUUUAGCAUGCCUCAUUUGAGCGCAAAUACACCUGCAGCCAUCAAUUAUGCAAAGAGCCGGAGACCGAAGU ...((.((..(.(((.((((...)))).......(((((((((((((((.....))))))))...)))).)))...)))...((((...........))))..)..)))).......... ( -27.80) >DroSim_CAF1 2244 103 - 1 --------------ACCUGGGC--AUGUGUAUAAGUGUCAAAGGCAUGUGUUUAGCAUGCCUCAUUUGAGCGCAGAUACACCUGCACCCAUCAAUUAUGCAAAGAGCCAGU-UCCGAUGC --------------....((((--(.((((((..(((((((((((((((.....))))))))...)))).)))..)))))).))).))((((......((.....))....-...)))). ( -33.52) >DroAna_CAF1 2721 102 - 1 --------------GCCAUGGCGUGUGUGUAUAAGUGUCAAAGGCAUGUGUUUAGCAUGCCUCAUUUGAGCGCAAAUACACCUGCAGCCAUCAAUUAUGCAAAGAGCCAGU-UCCC---U --------------....((((....((((((..(((((((((((((((.....))))))))...)))).)))..)))))).((((...........))))....))))..-....---. ( -32.20) >DroPer_CAF1 68314 120 - 1 GGACUAAUACCAGUACCAGGACCCCUGUAUAUAAGUGUCAAAGGCAUGUGUUUAGCAUGCCUCAUUUGAGCGCAAAUACACCUGCAGCCAUCAAUUAUGCAAAGAGCCGGAGACCGAAGU (((((......))).)).((..(..((((((((((((....((((((((.....)))))))))))))).(((((........))).)).......))))))..)..))(....)...... ( -28.70) >consensus ______________ACCAGGGC__AUGUGUAUAAGUGUCAAAGGCAUGUGUUUAGCAUGCCUCAUUUGAGCGCAAAUACACCUGCAGCCAUCAAUUAUGCAAAGAGCCAGU_UCCGAAGC ...................(((...((((((((((((....((((((((.....))))))))))))))...(((........)))..........))))))....)))............ (-21.56 = -21.92 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:12 2006