Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,166,783 – 4,166,890 |
Length | 107 |
Max. P | 0.805990 |
Location | 4,166,783 – 4,166,890 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 91.02 |
Mean single sequence MFE | -37.34 |
Consensus MFE | -29.22 |
Energy contribution | -29.25 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.18 |
Mean z-score | -3.03 |
Structure conservation index | 0.78 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805990 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4166783 107 + 22407834 CUGCUGCC-GUAUAGGUCUUUGCGAGGAAGGCCAAUAAAUUAAUUUAGCUAGAUGG-CGACUGGCUGACUUGCUGGUUGAAUGGCUGAAUUGAAGUUUGGGUUUGCGGG ((((.(((-.....(((((((.....)))))))......((((((((((((.....-((((..((......))..))))..))))))))))))......)))..)))). ( -40.90) >DroSec_CAF1 1636 107 + 1 CUGCUGCC-GUAUAGGUCUUUGCGAGGAAGGCCAAUAAAUUAAUUUAGCUAGAUGG-CGACUGGCUGACUUGCUGGUUGAAUGGCUGAAUUGAAGUUCGGGUUUGCGGG ((((.(((-.....(((((((.....)))))))......((((((((((((.....-((((..((......))..))))..))))))))))))......)))..)))). ( -40.90) >DroSim_CAF1 1619 107 + 1 CUGCUGCC-GUAUAGGUCUUUGCGAGGAAGGCCAAUAAAUUAAUUUAGCUAGAUGG-CGACUGGCUGACUUGCUGGUUGAAUGGCUGAAUUGAAGUUCGGGUUUGCGGG ((((.(((-.....(((((((.....)))))))......((((((((((((.....-((((..((......))..))))..))))))))))))......)))..)))). ( -40.90) >DroEre_CAF1 1853 107 + 1 CUGCUGCU-GUAUAGGUCUUUGCGAGGAAGGCCAAUAAAUUAAUUUAGCUAGAUGG-CGACUAGCUGACUUGCUGGUUGAAUGGCUGAAUGAAAGUUCGGGUUUGCGGG ((((.(((-.....(((((((.....))))))).........(((((((((.....-((((((((......))))))))..))))))))).........)))..)))). ( -36.30) >DroYak_CAF1 1771 108 + 1 CUGCUGCUGGUAUAGGUCUUUGCGAGGAAGGCCAAUAAAUUAAUUUAGCUAGAUGG-CGACUGGCUGACUUGCUGGUUGAAUGGCUGAAUGGAAGUUUGGGUUUGCGGG ((((.(((......(((((((.....)))))))..((((((.(((((((((.....-((((..((......))..))))..)))))))))...)))))))))..)))). ( -37.20) >DroAna_CAF1 2078 105 + 1 CUGCAGUU-AU-UUGGUAAAUGCAAGGAUGGCCAAUAAAUUAAUUUAGCUAGAUGGCCGACUGGCUGACUUGCAGCAUGAAUGGCUGAAUGAAAAUUUCGGCCU--GGG ((((((..-..-(((((.............))))).........((((((((........)))))))).)))))).......(((((((.......))))))).--... ( -27.82) >consensus CUGCUGCC_GUAUAGGUCUUUGCGAGGAAGGCCAAUAAAUUAAUUUAGCUAGAUGG_CGACUGGCUGACUUGCUGGUUGAAUGGCUGAAUGGAAGUUCGGGUUUGCGGG ((((.(((......(((((((.....)))))))......((.(((((((((......((((((((......))))))))..))))))))).))......)))..)))). (-29.22 = -29.25 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:11 2006