Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 444,559 – 444,654 |
Length | 95 |
Max. P | 0.741077 |
Location | 444,559 – 444,654 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 78.44 |
Mean single sequence MFE | -30.35 |
Consensus MFE | -16.89 |
Energy contribution | -16.75 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.11 |
Mean z-score | -1.90 |
Structure conservation index | 0.56 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.741077 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 444559 95 + 22407834 UACCGCCACUGAUUCACCCAGUUCGCAGCAUAACAUCGGCUCUCAGUGCUCAUCCACUUGUAGCACUGUGGUGGUAACAUCUCCUGUAAAUG---GAG (((((((((...............(.(((.........))))..((((((((......)).)))))))))))))))....((((.......)---))) ( -28.60) >DroVir_CAF1 9491 88 + 1 AACGACCACGGAUUCACCCAAUUCACAGCACAACAUUGGCUCGCAGUGCUCCUCCACGUGCAGCACGGUGGUGGUCACAACGCCGGCC---------- ...((((((((......))..............((((((((.((((((......))).)))))).)))))))))))............---------- ( -26.60) >DroPse_CAF1 21176 95 + 1 GACGGCCACUGAUUCCCCCAGUUCCCAGCACAACAUUGGAUCCCAGUGCUCCUCCACCUGCAGCACUGUGGUGGUGACAUCUCCAGUGGCCG---GAG ..(((((((((......(((((............)))))....(((((((.(.......).))))))).((((....))))..)))))))))---... ( -37.20) >DroMoj_CAF1 8440 88 + 1 CACGACCACAGAUUCGCCCAAUUCGCAGCAUAACAUUGGCUCGCAGUGCUCAUCGACGUGCAGCACUGUAGUGGUAACAACACCACCG---------- ....(((((......(((.(((............))))))..(((((((((((....))).)))))))).))))).............---------- ( -23.20) >DroAna_CAF1 7418 98 + 1 AACCACCACAGACUCGCCCAGUUCGCAGCACAACAUUGGCUCCCAGUGCUCCUCCACCUGCAGCACUGUGGUGGUCACCUCGCCGGCCAAUACAGGUG ...((((........((.......))........(((((((..(((((((.(.......).))))))).(((((.....))))))))))))...)))) ( -29.30) >DroPer_CAF1 21183 95 + 1 GACGGCCACUGAUUCCCCCAGUUCCCAGCACAACAUUGGAUCCCAGUGCUCCUCCACCUGCAGCACUGUGGUGGUGACAUCUCCAGUGGCCG---GAG ..(((((((((......(((((............)))))....(((((((.(.......).))))))).((((....))))..)))))))))---... ( -37.20) >consensus AACGACCACUGAUUCACCCAGUUCGCAGCACAACAUUGGCUCCCAGUGCUCCUCCACCUGCAGCACUGUGGUGGUAACAUCUCCAGCG___G___GAG ....(((((........(((((............)))))....((((((((........).)))))))..)))))....................... (-16.89 = -16.75 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:35 2006