Locus 1538

Sequence ID 2L_DroMel_CAF1
Location 4,154,510 – 4,154,612
Length 102
Max. P 0.627497
window2487

overview

Window 7

Location 4,154,510 – 4,154,612
Length 102
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 89.95
Mean single sequence MFE -28.04
Consensus MFE -22.51
Energy contribution -22.52
Covariance contribution 0.00
Combinations/Pair 1.23
Mean z-score -2.24
Structure conservation index 0.80
SVM decision value 0.19
SVM RNA-class probability 0.627497
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4154510 102 - 22407834
-CGGCCGUCUUUAAAAGGCACGCAAAUUAGCCAUAGAUAGAGAGCCACAUUAUCUUGAUGGCC---GUCUCUGGAAGUAAACAUUAUUUUAUUGGCACUUAAAAAA
-(((((..........))).)).......((((....((((((((((((......)).)))).---.))))))((((((.....))))))..)))).......... ( -24.20)
>DroSec_CAF1 283221 105 - 1
-CGGCCGCCUUUAAAAGGCACGCAAAUUAGCCAUAGAUAGGGAGCCACAUUAUCUUGAUGGCCGUCGUCUGUGGAAGUGAACAGUAUUUUAUUGGCACUUAAAAAA
-..((.((((.....))))..)).......(((((((..(.(.((((((......)).))))).)..)))))))(((((..(((((...))))).)))))...... ( -31.00)
>DroSim_CAF1 287388 105 - 1
-CGGCCGUCUUUAAAAGGCACGCAAAUUAGCCAUAGAUAGAGAGCCACAUUAUCUUGAUGGCUGUCGUCUGUGGAAGUGAACAGUAUUUUAUUGGCACUUAAAAAA
-(((((..........))).))........((((((((.((.(((((((......)).))))).))))))))))(((((..(((((...))))).)))))...... ( -32.60)
>DroEre_CAF1 299251 102 - 1
-CGGCCGUCUUUAAAAGGCACGCAAAUUAGCCAUAGAUAGAGAGCCACAUUAUCUUGAUGGCC---GCCUGUGGAAGUAAACAUUAUUUUAUUGGCACUUAAAAAA
-.(((((((.......(((..........)))..((((((.(.....).)))))).)))))))---(((.((((((..........)))))).))).......... ( -26.40)
>DroYak_CAF1 306362 102 - 1
-UGGCCGCCUUUAAAAGGCACGCAAAUUAGCCAUAGAUAGAGAGCCACAUUAUCUUGAUGGCC---GUCUGUGGAAGUAAGCAGUAUUUUAUUGGCACUUAAAAAA
-..(((((((.....))))..((.......((((((((...(.((((((......)).)))))---))))))))......))...........))).......... ( -28.72)
>DroAna_CAF1 333053 103 - 1
ACCCCCUGCUUUUAAAGUCACGAAAAUUAGCCAUAGAUAGUGGGCCACAUUAUCUAGAUGGUC---GUCUAUGGCGGCAAACAAUAUUUUAUUGGCACUUAAAAAA
......((((..((((((...........(((((((((....((((((........).)))))---)))))))))..........))))))..))))......... ( -25.30)
>consensus
_CGGCCGUCUUUAAAAGGCACGCAAAUUAGCCAUAGAUAGAGAGCCACAUUAUCUUGAUGGCC___GUCUGUGGAAGUAAACAGUAUUUUAUUGGCACUUAAAAAA
...(((((((.....))))...........((((((((...(.((((((......)).)))))...))))))))...................))).......... (-22.51 = -22.52 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:00 2006