Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 4,153,462 – 4,153,572 |
Length | 110 |
Max. P | 0.860901 |
Location | 4,153,462 – 4,153,572 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.84 |
Mean single sequence MFE | -31.86 |
Consensus MFE | -27.28 |
Energy contribution | -27.53 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.04 |
Mean z-score | -2.07 |
Structure conservation index | 0.86 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4153462 110 - 22407834 UUACGGCAAAUGGUCGCAAAGUGUGUGAUUUAAAUGCACUUGGGCGACACUUUAAGACGCUCAAUUGCUCGCUUUAUUGUGUGGCCAUAAAAAAAGUUAGCCCCCC--UGC--A------ ....(((...((((((((.((((.((((.......(((.(((((((.(.......).))))))).)))))))..)))).))))))))(((......))))))....--...--.------ ( -30.11) >DroGri_CAF1 392630 92 - 1 UUACGGCAAAUGGUCGCAAAGUGUGUGAUUUAAAUGCACUUGGGCGACACUUUAAGACGCUCAAUUGCUCGCUUUAUUGUGGGGCCAUAAAA---------------------------- ....(((.....(((((.((((((((.......))))))))..)))))...................(((((......))))))))......---------------------------- ( -28.70) >DroSec_CAF1 282112 114 - 1 UUACGGCAAAUGGUCGCAAAGUGUGUGAUUUAAAUGCACUUGGGCGACACUUUAAGACGCUCAAUUGCUCGCUUUAUUGUGUGGCCAUAAAAAAAGGCAGCCCCCUCACCCUCU------ ....(((.....(((((.((((((((.......))))))))..))))).........(((.((((.(....)...)))).)))(((.........))).)))............------ ( -30.40) >DroWil_CAF1 404611 98 - 1 UUACGGCAAAUGGUCGCAAAGUGUGUGAUUUAAAUGCACUUGGGCGACACUUUAAGACGCUCAAUUGCUCGCUUUAUUGUGUGGCCAUAAAA-AAGGCA--------------------- .....((..(((((((((.((((.((((.......(((.(((((((.(.......).))))))).)))))))..)))).)))))))))....-...)).--------------------- ( -28.61) >DroMoj_CAF1 455759 104 - 1 UUACGGCAAAUGGUCGCAAAGUGUGUGAUUUAAAUGCACUUGGGCGACACUUUAAGACGCUCAAUUGCUCGCUUUAUUGUGCGGCCAUAAAA-AAGCCAAAGCCU--------------- ....(((..(((((((((.((((.((((.......(((.(((((((.(.......).))))))).)))))))..)))).)))))))))....-..))).......--------------- ( -33.61) >DroAna_CAF1 332180 117 - 1 UUACGGCAAAUGGUCGCAAAGUGUGUGAUUUAAAUGCACUUGGGCGACACUUUAAGACGCUCAAUUGCUCGCUUUAUUGUGGGGCCAUAAAA-AAGGCGGCCCCAC--UUUUCUUCCCCA ....(((.....(((((.((((((((.......))))))))..))))).......((.((......))))))).....((((((((......-.....))))))))--............ ( -39.70) >consensus UUACGGCAAAUGGUCGCAAAGUGUGUGAUUUAAAUGCACUUGGGCGACACUUUAAGACGCUCAAUUGCUCGCUUUAUUGUGUGGCCAUAAAA_AAGGCAGCCCC________________ .........(((((((((.((((.((((.......(((.(((((((.(.......).))))))).)))))))..)))).)))))))))................................ (-27.28 = -27.53 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:59 2006